RNA id: XM_007254052.3


Basic Information

Item Value
RNA id XM_007254052.3
length 3615
RNA type mRNA
GC content 0.47
exon number 5
gene id efna5
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25780429 ~ 25966065 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTCGGCGGCTACCATTGGTTTTACCTTGTGCCAGACAGAGtccgaaaaaaaagaaaagaaaaacaaaaaaaaacagaaagactgCATGGAAGAAGAAGGAGAGCTGCGCGCTTTCTTGGGCTCATCCCTCCCTCGTTATTTAGCAGTGGAATGAATGGTGGCACTGGTTTCTGTGGCTGTGTTTGTCTTCTGCCGTCAGTCCGCAGCCTCGCTCATGTTCTCCCGCAGGCGAAGCGACTCCTCCCCGCCGCCTCATCCGTGAcacttcagcagcagcagcagcgggagCCGCGCTGAGGAAGGAAGGAGACGAGCCTGCGCTCCGGTGGCTGGAAGCTCCGTGGAGACACACGCCGCGCCGGCTGAAACCAGCGAGAAAAAGTTGAGGAAAACGCAGAAGGACAGAGGAGCCGGACGGAGCTGTTCATTCTTCTCCTCCACACAGTTTTTGGACTAACCTGGCTGGGGTCGCGTGCGCTGAAACGGCGGACAGACCCTCAGAGAGACGCCGCGAACAGGAACGGAGCTCCGGCTGGTTTGGCTGCTCGAACTGAACCATGCTTTTTTAgctaaatcaaatattttttatttttctaagcGTTTAAGCTAGAAAAACTGCTGTTTTGGAGCTGTCtgcctgtgtgtttgtttgtttgtgaaagagggggaaatatataatatgtgtttGGAGGTCCAGTGAAGAAGTTCCAGCCCAGGAGAAACCTCCTTTTTTGAattttatgaattttaccagttttaTGAACACTGCCCTCTCGAAAGCCCTCTCAGCCTTGGgcttctctttcttgttttagAGGCTGTTTTACAGGCGAAAAATAAGCTCCCACACGTCTTTTCCCTACACCATTTCTCCCAGCTGCTTGTACGTATGTGTATGTTTCTGAGACGAGCTCAAGCGCTTTCTGAGGACGGTGTAGCCCAATGAGAGTGAACTGACGGCGGGCGAGAGTGAAGCTAAGCAGCCGCTGATTTCTAGTTCTGCCTCCACGGCCCACAGGACACGAGAGAGCCGCAACTTTCCGCCGTAGTGATGCTGCAGGTGGAAATGATCATATTCGTCTGCCTGATCCTTTGGATGTGTGTATTTAGCCAAGAGCCGAGCTCCAAGGTGATGGCCGACCGATACGCCGTCTACTGGAACCGGACCAACCCCAGgTTTCACCGAGGGGACTACCACATCGACGTCTGCATCAACGACTACCTGGATGTCTACTGCCCACACTACGAGGACTCGGTCCCTGAGGAGAGAACCGAGCGCTACGTCCTCTACATGGTGAACTACGATGGCTACAGCACCTGCGACGACACGGCGAAGGGCTTCAAGCGCTGGGAGTGCAACAGGCCGCACTCCCCCAACGGCCCCCTCAAGTTCTCAGAGAAGTTCCAGCTCTTCACACCTTTTTCCCTGGGTTTCGAGTTCCGGCCAGGCAGAGAGTATTATTACATATCATCCATGGTTACAGAGACTGGAAGAAAAGGCTGTCTTAAGCTGAAAGTCTTTGTGAGACCAGCGAACAGCTGTGTGAAAATCATAGGCGTTCACGATCGAGTTTTTGACGTTAACGACAAAGTAGACAATTCATTAGAACCCAGAGACGACACCAGTCACGAGTCAGCTGAACCCTCTCGGAGCGACGCAGCTAACTCAGGGCACGGGCCCCCTGTGCTCGGCCCCCTGCTGGCTCCTCTGCTCCTCGGCATCTCCGCGCTGCTCAACTTATAGCcccccttcttcttcttcttcttagtCCCAGACAAGCCCCTGCAGCCCCCAGCGCCCTTCTCCCACGAGACCAGAAGCCTTACACAGGCCGAGGGTTACGGGAGGGCTCCCAGACTCTCCAGGAACACTACTTACGGCCCTCGTGtttcgtttgtttttttgtttgttttttccaaatatttaaGTGGTCTTTCTCAGTCTGTGATtaaggatgaaaaaaaaattgattagtAGTGCAAAAGGAGAAAAGCTTTTAGCCAATCAGCTGAGACGCCCTAGCGTGATGCAGCATCTGGTCAGCAGGGATCAGAGCTTAAGGGGGTGGAGAGGTTCCACGTTTAGAATAAACTGTGGGTTTTAAGTTAACGATACTCTAAATGAACAGATACAAATGTGTACGTTAAGGGTGTGTCCTGGTGCAGTACAGATCTCCTAGCTCTGGTGTTAGAGACAAATATAGAAGGACTGTTTGCCTGTTCTTTCCTGTCGGCCTTCGACCCTAACAATTCGCAAAGTTCTTCGTAAAGTTCTAGAAAGTTCTAGATTTGGCTAAAAAAACTATGTTCTAACTGGATGACAGAAAGTCTGGACTCTACCCTGAagaaaaggggggaaaaaacacaccagcTGGTCATGTGGGCCAGTTGACCCTGGTGGctgagtgtgttgagtgtgtgtgtgagtgtgagtgtgtgttcactaACTGACTTGCGATTTTCTTGCGATTTGATTTGAAAACAAGGAGGAAGATAAGACACATATTTATTCTCTGCAAATGAGGACAATGACTTGTCTTAGTAGACCACACCACTAAAACagtgcttttttgtattttgtaggATAAACTTAACTGCAGCATAAATGCCTATATTTTTCCTATGACTTTTATCTATTGATATGAAATATCAACGTTAACGAATCATCAATTCAACAATTCTTTATCGTCATGACTGCATACGTCCAcctctgtatatacagtaccaaaagGGGCTGCACATGGTGTTCACTTCGGTTTCCTCCCCCCAAGAAGgaaaactaaatcaaaaacaCAGCATCTGTTACAAAACGATGAACGATGAATATCTACGTATATCCAGTTATTTGAAACACCTTCGCGCATCTTTTACCTTCTTTTTACGACTACTGTACATTGATATAGCCGCTAACTAGTGTAACTCAGcctcatattttaatttttttacattttttttttattacgacGTTAACAAACAATGACACTCGATGATCAATCTTAGGTACTCTGTGATCCCACTGTTTGCCTTCTGCATGGCAGCCTTGAATCTATGATGAATTTGTTTGTTGCTTTTGCCAGTTCAGGCCTAGAAGGAGCAggcttttagattttttgaatCTTTAGAATTTTTGAGTTTTGGgatagaatgttttttttttttgattgtgcGCAGTCACACCTCCGACCGTTTCCAGTTTTAAGTGACTCCTTAATGAGGTTCAGGCACGCCGAGTTCATGTTGTCATGTTGTGGCAGGGGAGATATTATTTGCGCTATTAAAAATAGTTGGTTGAAAGCGGCCTCTGCCGAGGGAGGCTCGGATTTCACTGGGataaatttttcttttcttttttgaccTTGCAGTCGGAGGGTTCCGCACGGAGCAACTAAAGACGGGCAGCGAggaagaaacagaaacagacgTGGTTTGAGTTTGGAGGAGAGGGGTTAGGGGAAGTGGTTCGTAGGCACTCGTGAAAATAAACAATAGCTGGGGAATTTTCTTtaacaatcaaacaaaaattGAGTAACTGTTTTCTGCCCTTTTGATTGTCAGCAGGCCTGTTTCGTTCCCtcgccagttttttttttttttttttttttttttttttgt

Function

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73475 lncRNA downstream 25369 25754722 ~ 25755060 (-) True G54498
TU73467 lncRNA downstream 51828 25728383 ~ 25728601 (-) True G54490
TU73463 lncRNA downstream 85434 25649454 ~ 25694995 (-) True G54486
TU73444 lncRNA downstream 147208 25629795 ~ 25633221 (-) True G54471
TU73430 lncRNA downstream 175222 25602417 ~ 25605207 (-) True G54466
TU73574 lncRNA upstream 56785 26022850 ~ 26023104 (-) True G54572
TU73579 lncRNA upstream 173251 26139316 ~ 26177147 (-) True G54574
TU73585 lncRNA upstream 348527 26314592 ~ 26320493 (-) True G54580
TU73597 lncRNA upstream 580007 26546072 ~ 26551536 (-) True G54592
TU73609 lncRNA upstream 607335 26573400 ~ 26576425 (-) False ccl28
XM_015607074.2 mRNA downstream 159164 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA downstream 160772 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA downstream 160772 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA downstream 160772 25612122 ~ 25619657 (-) False lrrc2
XM_022670400.1 mRNA downstream 218362 25549350 ~ 25562067 (-) True fam240a
XM_007254053.3 mRNA upstream 129046 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA upstream 222041 26188106 ~ 26529204 (-) False fbxl17
XM_007254067.3 mRNA upstream 593836 26559901 ~ 26569939 (-) False LOC103042298
XM_022670413.1 mRNA upstream 607617 26573682 ~ 26575743 (-) False ccl28
XM_007254071.3 mRNA upstream 628275 26594340 ~ 26599322 (-) False ubox5
trnak-uuu_38 other downstream 184432 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 185265 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 186098 25594259 ~ 25594331 (-) True trnak-uuu_36
trnak-uuu_35 other downstream 187512 25592845 ~ 25592917 (-) True trnak-uuu_35
trnak-uuu_34 other downstream 188924 25591433 ~ 25591505 (-) True trnak-uuu_34
TU73603 other upstream 592341 26558406 ~ 26569931 (-) True LOC103042298
TU73608 other upstream 607335 26573400 ~ 26575743 (-) True ccl28
TU73957 other upstream 1200621 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 1503153 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1762646 27728711 ~ 27731079 (-) True G54947

Expression Profile