RNA id: XM_022670408.1


Basic Information

Item Value
RNA id XM_022670408.1
length 1961
RNA type mRNA
GC content 0.46
exon number 5
gene id ubox5
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26594340 ~ 26599322 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTAGAAGAAAGTCATTCaaacatcattcttgtagccaAATTTACAGATGCTGACTACCTCATGAAGCCATtgagaaaataccaagagtgtgcagatctgtcatcaaagctaaatgtgGTGCTGCTATGTTGTGCCATGCATAAGTCACCATGGTTGTCAACCTCTGCCTGCCACACTTTCAAACCACGGCTCACTGCAACAAGAGGTCTTCAAGCCTCTGTTCCTCTTTTTCCCAGCTATGCGCAGATGGCTATGATGTTTCCAACCTCCTGGCATGCGACCCTTCTGCTCGACGGAGAGGTTTTAAGCTGGAGTACTTCCTGCGTCCTCCACTGCACGTAACTCTGCACTTTCGAGTGAGAGTTGAGCTGTGTCGTGTGGATGTTGAGCTTTGGCCTTGTGGTATGGACCAGGGAAGTGTCTCCAGGAAGCTCGAGATTCTTACCTGCTCTGATCCTGTCTCTGAAATATCAAAAGGTTCCCAGGAAGACAGTAGACAGTTTAAACTTGTGGGACGTTGCGAGCTAAGGGAGGATGTGCTTGCATGTTTTAATCATCGCAATTTCAAACATAGAATTCCTTTTCTTGAGGCACCACCTGAGCTTCCAGTGCAGGCTAAGCAACAAGAGCTCTGGAGTCGGGGCCTGGAGTCTCTGAACTCGGTGGCCCAACTTCGTATTAGTATACCCTTTGGTGGAGCTGGTTCTGCACTGGGAATAAAGTCGTTAGCAGTGTGGGGAGTTCCGGCTCGCTCTTGTCCTTCTGAGGAGCTTGCGAAGGTCCAAAAAGCACATTTTGACAGTTTGAAAGTGAAAATAAGACCTCCCTCTATATCACCAGTCTCATATCTTTCTACCTCAGACAAATCTTCTAGGCCAAACCCTGCACCCTCAGAAACCCCTATTCCAGACGAGTTTCTGGATCCTTTGACTCAGGAGCTCATGGTTCTACCATTGATCTTGCCCAGTGGCATGGTTATAGATAGTAGCACGTTAGAGGAGTACCAGAAACATGAAGCCACTTGGGGACGTTTGCCAAATGACCCGTTCACCGGAGTTCCATTTACACAAGACTCTAAACCACTTCCTAACCCTGTGCTTAAAAGCCGCATTGACAGTCTGATACTGCAGACAGGATGCACAAGAGTCGGAAGCAGGAATGGTCAGCTGAACAAACCTCACACTTCCAAACTTGTTGATCCTCCACATGCTGAAAGACCCACTTGCTCGAAAGACTTGGTTTGCATTGGAAACTTACAAGCTGGACCCAGTGAGACTGGCATCCAGCAAAGCCAATCAGCAGGTATTGAAAGTgaaacaaaactgcaaaaagATATTTATGTCAATAAAAATAAGACACATAATGGATTTACTGACTCCAAGCTAAAGGGAACTAAAAGGAAATGTGAGTCAAACCTTCCGACCAGAACAAATTGGACACCACCTTATTCATCCCCCTTGACCAAAATGCCCAAAATGGATGCAAGCCTCACATCCCTCACAGACTCCAGCCAAACCTCTCATGAGCAGCGTCTGTCAGACAGTTTAGACCAAGCACTAAGTTCTGCTCTGCAGGGTTTACCAACATATACCTCACAAAGCAAACTGAAGCCGGAGACAACATCAGGACCGAGCAGATGTGGGTCATGTTCTTGTTCCTTGACTGTTTATTCTGCAAGCTCACCAGCTTACTCTTTACCTTGCGGTCACCTGCTGTGTCGAACATGTCTGCGGAATGTACATCGTCCCGGCTCACAAAGACTGCCAATCACCTGCCCCACATGTAAAACCTCTGCCTCACCCAGTACAATCACACGAGTGCATCATTAATGTGTCAGTCCTGATTGTGAAGGGAAATAATCTTCTGGTTTTGATGTAATAAGCTAATGTTATGTTCATGTTTTGCTCTTTTGTCATTTGTAATACATGAAATATCAATAAACAGGCAAGCAAAGCAAAA

Function

GO: NA

KEGG:

id description
K10600 UBOX5, UIP5; U-box domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73609 lncRNA downstream 17915 26573400 ~ 26576425 (-) False ccl28
TU73597 lncRNA downstream 42804 26546072 ~ 26551536 (-) True G54592
TU73585 lncRNA downstream 273847 26314592 ~ 26320493 (-) True G54580
TU73579 lncRNA downstream 417193 26139316 ~ 26177147 (-) True G54574
TU73574 lncRNA downstream 571236 26022850 ~ 26023104 (-) True G54572
TU73630 lncRNA upstream 73783 26671908 ~ 26676623 (-) True G54613
TU73640 lncRNA upstream 102471 26700596 ~ 26701882 (-) True G54623
XR_002650059.1 lncRNA upstream 128526 26726651 ~ 26734830 (-) True LOC111192648
TU73674 lncRNA upstream 150951 26749076 ~ 26749279 (-) True G54651
TU73665 lncRNA upstream 178441 26776566 ~ 26779698 (-) False LOC103024953
XM_022670413.1 mRNA downstream 18597 26573682 ~ 26575743 (-) False ccl28
XM_007254067.3 mRNA downstream 24401 26559901 ~ 26569939 (-) False LOC103042298
XM_007254053.3 mRNA downstream 65136 26095111 ~ 26529204 (-) True fbxl17
XM_022670403.1 mRNA downstream 65136 26188106 ~ 26529204 (-) False fbxl17
XM_007254052.3 mRNA downstream 628275 25780429 ~ 25966065 (-) True efna5
XM_007254076.3 mRNA upstream 3338 26601463 ~ 26614549 (-) True lzts3
XM_022670411.1 mRNA upstream 23532 26621657 ~ 26627863 (-) True LOC111192646
XM_007254073.3 mRNA upstream 42376 26640501 ~ 26643368 (-) True LOC103043953
XM_007254072.3 mRNA upstream 50414 26648539 ~ 26653586 (-) True LOC103043649
XM_007247212.3 mRNA upstream 163007 26761132 ~ 26779714 (-) False LOC103024953
TU73608 other downstream 18597 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 24409 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 998343 25595925 ~ 25595997 (-) True trnak-uuu_38
trnak-uuu_37 other downstream 999176 25595092 ~ 25595164 (-) True trnak-uuu_37
trnak-uuu_36 other downstream 1000009 25594259 ~ 25594331 (-) True trnak-uuu_36
TU73957 other upstream 568561 27166686 ~ 27168510 (-) True G54854
TU73985 other upstream 871093 27469218 ~ 27473347 (-) True G54873
TU74086 other upstream 1130586 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 1555296 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 1819608 28417733 ~ 28423955 (-) True LOC111192657

Expression Profile