RNA id: XM_022670384.1


Basic Information

Item Value
RNA id XM_022670384.1
length 6899
RNA type mRNA
GC content 0.52
exon number 40
gene id svil
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24786251 ~ 24920590 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcctttcctctctcactcactcactccctccctctctccctcccttctcTGGCTGTCCCGGGACACTCCTGCAGCTTCGGCTGCATCACCTTGCAGTCCACGCGCTCGCCGCTGCCTGCCTGCAGTCCCCTCCCTCCACACTACTTCTCCTCCttcaatctctctctcgctctctttctgtctctctctttctttctctctttttctctctttctctgcttgcaccacctccttctcctccttctctgtTCTTTTTTGCCTTTCCTCACctgcttttccttttctctaACTTGACAAAATGTATCAGAACCGGTGGATCACCAACTATCTCAGCCATGTCAAGTTCTGTCAAGGCATCACCAGTGAAACCGCCACCAAGGTCAGCAAACCTAAACTACAGCGTAGGGCACTTAGttttcagAAACAGTTTTCATTTGAGGATAAAGACGAGGCAAACCAGACCAATAAAGCTGTTGATGCCAATCCTTTGGTCACTCTACCCAAGGtctCAGAGTTAAGGAAGCGATTTGAAACCATCAGCACGAGCCAGAGTGACTGCTGGAACATGAACAGGAAGGAGCGCATTGCACGGCGGCTGGAGGGAATCGACAGCGATATTCAGCTATCCCTTCCCACCACTGGACTGGTGACCAATCGGCTGCTAGAGGAGGACACGCCCAGATATACTCGAGCAGCAGATTCGTGTGACCCATGTACAGTTCCTGTTCAGCACTTTGGTAAAGATGACGCCACTGTATCCCGAGCCCACGCTGACCCCTCCTACAACCCCGTCTCAGTGGATAAATCAGAGCAGGAATCTAAAGCTGAGCGCATCGCCCGCTACAAAGCCGAGCGCCGCCGCCAACTCTCAGAGCGCTACCGCATCCTCCTGGACGAAGAGTCCGATCCGGCCTGTAGCAGCCACTACTCCAGAGTCCGGAGAGAGCCCGAGGGGTCCGACCGGCAGCACAAGCTGCTGGAGGAGGGAGCGGAGGAGGTAGAGCACAATGCCCACACTTCACGCTCTCGTGCAGGACGGACCCCCGCTCAGACCGGCACGGATCCGGACTACACCCGGGAGCTGTCCGGGTCGCTGTCTGAACACGAGCGCAGGATGAACCTGGAGAACCAGCGGAGAGCTCAGGACCGAGGGGCAGTGCGTGGAGGAGGCGAGGCGGCTCCGGACCACTCAGCTTATATGGACACTTCCGGGAGTGCCAAAGCTCCAGCGAGAGAGCATGGATACACGGGGGTCACAGTGGTCCCCAGCTCTCCTAAAGCAGGCCAAACACCCAAACCGGCCTCCTCTCCTGGAGATATGTTCATCGAGCAGCAGGCCCACCAAATTCTTCACAGGCAAGGGTCTTGCCCTGCCTCAGAACCACAAATCGTTGAAGcGGATGAGGAGAAGTTGGATGACAGAGCGAAGATGAGTGTTGCTGCCAAGCGCTCTCTCTTCAGGGAGCTGGAGAAGACTGTGGATGGGGCAGCTGTAAAGCCACACAGTCAAAACGCTGCTATAGCACGCAGACTGAGACGCAACCAGGATCGCTACCGCACCCAGCCTGTCACTTCAGAGGAAGTAGTCATTGCTGCTAcCTCTGTGGTAAGAGAACAGGCAAAGAATGCCCGACTTCTTCAGGAAAGTTCAGAAGCAGAGAAGAGTGTCCACACTGTTCCTGCTGATACTCACGAGGAGCCTGACCTGTCCACTCTCAGCCTGGCAGAGAAGATGGCCATCTTTAACAGGCTGACCCAGCAGTCCTCGCTCAGTCCCATCACCCGCAGAGACAGCCGGTCCCGCCGCAGTAACGCCCGCTACCAGACCCAGCCCATCACACCTGGAGAGGATGGCTCGGATTCTGAACTTTTTGAGGAGGAAATGCAGAACTCAGATGGACTGAGTGATCTTGACCATATTGGAGGCGGGTCTCATTTAAGCTCCGCCTCCTCCATCAAGTCTTCCACAGTGTCTACAGCACATGCTGGTGACATCCATCTGACCACGCCCGTGTCCACTGTGGCCTATGATGAGAGAGTGCTGCCCCCCTGGCAGCAGCCAACTACGGTGGTCCAGAACCAGAAAGGCCCATCTGAACTGCCTGTAGGTCAGAGAGAGGAGGGGAAGAGGAAACTGCCCTCCCCAGACAGCGTGAAACAGCCAGCCCGAGAGTGGGAGGAGCATCAAGGGTACACCAAGACTGCGGTGACCTCTGACTTCCAGGAGACGGACGGTCAACAGAGGTCAAATATGGCAGTTTCGGGTCTCCCAGAGCAGCCAGTTTCAGTGCGAGCCGTACCACAGTCCTCATCCTCAAACTGGAGCGCCGCACtcacaccgcacacacacactcacgcacactcTGCACAGCCCCCCGAGCCCAGCAGAACCTTCCCtgaggagagggagaggaaacGAGAGCGGGACAGAGACCTGTACGCTGAAGAGGCAGACGAGCTGGCAGACATCATGTCATCCCGACAGATGTCCATCAAAGAGAGGCTGGCTCTGCTGAGGAAGAGCGGTGAGGAGGACTGGAGGAACAGGATCAATAAGAAGCAGGACGTTGTGCAGGTGGCCATTTCTGAGAGACACGCTCAGCTCTGGGAGGTGGAGCAGACCTTCAAGAAGAAGGGCAATGGGATGATAGATGACTTTGCGGTGTCTGATCAGCTCTGGGAACCTGTCTTTTCCTCCACTTTTTCCTGTGCCTCTGAACCACTGGATCAAATCGAGCCCCCTCCCCAGGCCAAACCCCTGCCTGTGCAGGTGGATGATCTTCACCCGTGGAGACGCAAGAGGATTGGAAATGAGGTGGTGGAGAGTCACCACATGGAGCGGATGGAGATGTCCATCCACGAGCGCAAGCAGCTCATCACAGCCCGAGAGGATGCCTGGAAGTCCAAAGGTTACGGAGCTGCCAATGACTCCACCCAGTTCACTGTGGCTGGCCGGATGGTGAAAAAAGGTCTGGCAGCCCCCACAGCACTCACAAATCCCCCCCTGACCCCTACATCCTCCAAAAACAAGAATACCATCAGTAAACCCCAGGAAGAGATCGAAGTCAGACAGGATATGAAAGTGGAGTCTGACAGGAAGCTGGACAAGCTGGAGTCCTTCCTGGGCCGACTGAACAAGCAAGTGGAGGGTTTTCCAGAGACCACACTAACAGTCACAGAGAAGACCGTGAAGGAGGTCATGACCCTGGATGATGAGTGCTTTGATAAGTTCTACAGGCACACAGAGGAGCTCGCCAACGTCACCGGCAAAGTGGAAATCAGCGATGATTTTGATGCCATTTTTGGAACACAGATGCCAAAGCTGACTTCAGAGATGGTGCAGCACAAGCGGGCAGTGCGTCCAGCCCGGAACGTGCAGTCTTCCAGAAACCCTCTGAAGCTTCTGGCCTCAAGAGAAGACATCAGGCATGAATACACAGAGCAGAGGCTGAACATTGGCATGCTGGAGAGCAAGAGGATCAAGCAGGAGAAGAtgagtAAGAACAGTGGATTCTCAGCAGTGGCTCTGGCAGGCTTGGCGAGTAAGGAGAATTTCAGCAGTGTCAGTCTGCGCAGCGTCAACATCACAGAGCAGAGCTCCCACAGCAGTGCAATGCCCTACAAAAGCACCATGCTCATGCAGGTCAAAGGTCGACGGCATGTTCAGACCAGACTAGTCGAGCCCAGATCGTCCTCCCTGAACAGTGGAGATTGCTTCCTTCTGGTCACCCCGCACCACTGCTTCATCTGGGTTGGAGAGTTTGCGAACGTTATCGAGAAAGCTAAAGCTGCAGAGCTGGCAACCTTCATACAGACCAAGCATGACCTGGGCTGTAGAGCCTCGTATGTGCAGACCATAGAGGAGGGATGCAACACCCACAGCCATGCAGCCAAGGAATTCTGGAAGATCCTGGGTGGGCAAGCAAGTTACCAAGCTGCAGGAACTCCAGAGGAGGATGAGTTCTATGAGACGGCCATAGTGGAGACGAACTGTGTCTACAGACTGCAGGAAGATAAACTGGTGCCTGATGATGATTACTGGGGCAGAGTGCCCCGCTGCTCCATGCTCAACCCCACTGAGgTGCTGGTGCTGGATTTTGGCAGCGAGGTGTATGTGTGGCACGGTAAAGAGGTGACATTAGCCCAAAGGAAAGTGGCATTTCAGCTGGCCAAGCACCTGTGGAATGGCACCTTCGATTACACAACCTGTGATATCAACCCTCTCGACCCAGGAGAGTGTAACTCACTTATACCCAGGAAAGGACAGGGCCGGCCGGACTGGGCCGTGTTTGGTAGGCTGACCCAGCACAACGAGACCACGCTGTTTAAGGAGAAGTTTCTAGACTGGACTGACTCCAAGAAAGCTGCGAAGAAGAATGGCAACACACAAGAGGTTGAAGAGAAGGATGGGCAGAGTGGTGAATGCCGACCGTATGATGCCTCTCTGATGTTGCCGTTGTCGCAAGCCCCTGTACGGACCATTCTAGACGGAGTGGATGTGGGTCGTGGTTATGGAATGGTGGACGGAGAGGATGGGCGGGGCTTTGAGATCAGCACCCTGTCTGTAGATGTTTGGCACATTCTGGAGTTTGACTACAGTCGTCTTCCTAAGCAGAGCATTGGGCAGTTCCATGAAGGAGATACATATGTGGTTAAATGGAAGTATATGGTCAGCACAGCAGTTGGGAAGAGGTTTCATTCTGAACGGGTTGTAGGTCCAGGAAAGGAGAAGTGTTCGTATTTCTTCTGGCAGGGCCGTAACTCCACAGTGAGTGAGAAGGGAACATCAGCTCTGATGACTGTGGAGTTGGATGAGGAGAGAGGAGCACAGGTCCAGGTGCTGCAAGGGAAGGAGCCCCCCTGTTTCCTGCAGTGTTTTAATGGAGGGATGATTGTTCATGCAGGAAAaagggaagaggaggaggacaaCGCTCAGAACGACTGGCGGTTGTACTGTGTTCGAGGAGAGAAGCCGATTGAAGGTCACCTGCTGGAGGTGCTCTGTCACTGCAGCAGCCTTCGCTCTCGGACTTCCATGATTCTACTGAATATCCCCAAAGCCAGCATGTACCTGTGGCACGGCTGCAAGGCCCAGATGCACACGCGCGATGTGGGCCGCACTGCTGCCAACAAGATCAAAGAGCAgTGTCCTTTGGAGGCAGGGCTTCACAACAGCAGTAAAGTGACCATTCAGGAGTGTGATGAAGGAACAGAACCAGTTGGCTTCTGGGAAGCTCTGGGCAAGCGGGACCGGAAGGCATATGACTGCATGATCCATGATCTAGGCAAGTTTAACTTCACACCTCGACTGTATCAGCTGAGCAGTGCTTCGGGAGAGTTCACTGCTGTGGAGTTTAACTGTCCATTCAGAGAACCCAAACTGGTCAACTCCATGCCTTTCCATCAGGAGGATTTATACACTGCAGCTCAGCCAGctCTGTTTTTGGTGGATAATCATCATGAGGTGTACCTGTGGCAGGGCTGGTGGCCTCAGGACAGTGAGAACACCGGCTCAGCCCGTATCCGCTGGGACTCAGACAGGAAGTGTGCAATGGAAACAGTGCTGCACTACTGCAGAGAAAAGAATGAGAAGAAGCCTCCAAAAGCCTACTTGATCCATGCTGGTCTGGAGCCTCTTACCTTCACCAACATGTTCCCCTGCTGGGAGCACAGAGAGGACATCGCAGAGATCACAGAAAAGGAAGCAGAAGTGTGTAATCAGATCATTCTGGTGGAAGATGTGTTGGCCAGACTGTGTAAGGCCACCTATCCGCTGGCGGACCTGCAGGCCCGGCCGCTTCCAGAAGGTGTTGACCCTCTGCGGCTGGAAATCTACTTATCAGATGAAGACTTTGAGGGTGTAGGGGCCTATGGTAAGAAAGCACTGGAGATGACGAGGAGTGATTACGAGGCGCTGCCGGGATGGAAGCAGGTGAACGTGAAGAAGGCTAAAGGATTGTTTTAGCTGGGTTTGgggagtctgtgtgtgtttcagatggGGCGATAATCGCTGTGGACTGAGTGCATGAGATGGAACGAGCATGTGGGGAAACGTCATGCTCCCTTTCCGACTGGACTGCAGACACACGGGTGCGGATCCACAGGTGTTGGTCCAATGGAAAGGGCAGTATGAGGAGGAAGGTGGGAGTGGTGGATGTGGACGGAGGTCAGCAGAGGTTAACCAGCCTCGTGTAGcatatctctctccttctctctctttgtttgattccatttgttttgttttgttcacttttggaaaatgtaaagaagtgtaaatgaatagtggaaattgtgatgcttttttttctttcatttttttgtgttgaatgttttctttttgtgcATTCATTCCAATACATATCCTTGTAGTAGGAGCTGCCATACTGTTACCTCTGAGCACAGAGTCTGCAACAGTGCAGGCAGTGTCCAGCGCTCACCACCAGTCTGTATTTAGTTTTGATGTGtttgttataatttataattctaTTATAAAAGCTGTGGGAATACGTGTACAGTAAGACGTCTGGATTGTAACACTGTTACTGTCAGGAGTAATAATGTAATGATCCAGTCTAATGCCACTCACAGACTGACCCACATGCCATCACTAATTCCTCTGGTACCACAGGGGTGCAGAagttgtgtgtctgtttgtgtgtgtgtgttgtattcatgagtgtgtatgtatgtgtgtgtgtgtgtatggggcaGTGTGGTTGTATTGTGTCAGCCTCATTTCATTTAATATAATAGAAAGAAGAAGGTGAATCAACTCCCCTTACTACTACAGTGTATAGTGCCTTCGCTTTCATGTACAGTTTATATAAAGAACTATAGTATGCAATTTTATGAATtttgtgaatatataaatatgatgaaaataaaatatataaatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73099 lncRNA downstream 46196 24739836 ~ 24740055 (-) True G54239
TU73098 lncRNA downstream 59907 24725797 ~ 24726344 (-) True G54238
TU73097 lncRNA downstream 68064 24717481 ~ 24718187 (-) True G54237
XR_002650050.1 lncRNA downstream 148876 24616045 ~ 24637375 (-) True LOC111192640
XR_002650049.1 lncRNA downstream 181591 24604025 ~ 24604660 (-) True LOC111192639
TU73225 lncRNA upstream 72634 24950647 ~ 24953838 (-) False jcad
XR_002650052.1 lncRNA upstream 221163 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA upstream 347007 25225020 ~ 25226203 (-) True G54338
TU73284 lncRNA upstream 455387 25333400 ~ 25346697 (-) True G54358
TU73288 lncRNA upstream 459753 25337766 ~ 25340880 (-) False G54358
XM_022670368.1 mRNA downstream 178946 24494315 ~ 24607305 (-) True zeb1
XM_007250130.3 mRNA downstream 2721248 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2732163 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2732348 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2847803 21933269 ~ 21938448 (-) True anapc16
XM_022670385.1 mRNA upstream 72599 24950612 ~ 24998120 (-) True jcad
XM_007259653.2 mRNA upstream 72599 24950612 ~ 24979635 (-) False jcad
XM_022670391.1 mRNA upstream 193441 25071454 ~ 25099104 (-) True mtpap
XM_007260773.3 mRNA upstream 507677 25385690 ~ 25390707 (-) True ppic
XM_022670901.1 mRNA upstream 573099 25451112 ~ 25471966 (-) True cep120
TU73059 other downstream 434315 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 1694276 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1938914 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3966842 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3998633 20783738 ~ 20787618 (-) True G53598
trnak-uuu other upstream 688261 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 689128 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 689380 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 689632 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 689884 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile