RNA id: XM_022670314.1


Basic Information

Item Value
RNA id XM_022670314.1
length 1116
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC103024498
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18656832 ~ 18689601 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGTACGTCATCGGAAAAAGAGGACAGGAATGGATGCAATGTTTCTCTGGGCTGTTTCTGGATAGACTGGCTGCGCTTCACTGTCTCTGACTGAAAGCACAGGAGCTGGACATGCCCAGgTTTATCTGTCATGGACACACATGTGATACCTAAATTTTCCTCTAAAGATGAGGAGATCGACTTCTGGAAAGCGCTCTCCCTAAAGTACAAGAAAAGCTCTAAGGAGGCAcaggaggagctgctggagttCCAGGAGGGCAGCCGTGAGCTGGAGGCCGAGCTGGAGACTCAGCTGGGCCAGGCCGAACATCGCCTCAGAGACCTGCAAGCAGACAACCAAAGACTGCAGCATGAGCTGGACACCCTAAAGGAGAAGCTGGAGCAGCAGTATGCTCAGAGCTATAAGCAGatctctgtgctggaggacGACTTGGGCCAGACCCGGAGCATTAAGGAGCAACTGCACAAATACGTCAGAGAGCTGGAGCAGGCCAACGATGACCTAGAGAGAGCTAAGAGGGCTACTATTACCTCTCTGGAGGATTTTGAGCAGAGACTGAATCAGGCCATAGAGAGGAACGCCTTTCTGGAGAGTGAACTGGATGAGAAAGAGTCTCTCCTGGTGTCTGTGCAGAGATTAAAGGACGAGGCTAGagaccTGAGGCAGGAGTTAGCTGTGCGGGAGAGGCAGCCTGAGGTCACCCGGATGTCTGCTCCCAGCTCTCCCACTCCAGACAATGAGAAAACCGACTCTGCTGTGCAGGCATCGCTCTCATTACCTGCTACACCACTTAGCCAGAGCCTGGACAATGCCTTCAACAACCAGAAAGcattGGCCAATGGCTGTAATAATTCGGCCCTCACTCCGGCTGCCAGAATATCAGCTCTCAATATAGTAGGTGATTTACTACGCAAAGTTGGGGCATTAGAGTCTAAACTCGCTGCTTGTAGAAACTTTGCTAAAGATCAGGCAGCTAGAAAGAACTACGTCATCAACGCGAATGGAAACCTGATAAACGGGGACTTTACACAGTATTCCCACTCACTGCACACATCGTACTTTGACAAAGCAAGAGAGAGGGTGATATTTCCTGCATTGCTGCTGGGTAAATGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71703 lncRNA downstream 17582 18645879 ~ 18646876 (-) True G53175
TU71646 lncRNA downstream 261058 18402279 ~ 18403400 (-) True G53139
TU71640 lncRNA downstream 265310 18350272 ~ 18399148 (-) True G53135
TU71716 lncRNA upstream 88561 18778161 ~ 18867587 (-) True G53184
TU71720 lncRNA upstream 89114 18778714 ~ 18786708 (-) True G53185
TU71740 lncRNA upstream 159129 18848729 ~ 18892877 (-) True G53199
TU71753 lncRNA upstream 237726 18927326 ~ 18927932 (-) True G53209
TU71774 lncRNA upstream 427866 19117466 ~ 19119925 (-) False LOC111192726
XM_007259720.3 mRNA downstream 15583 18644455 ~ 18648875 (-) False nat9
XM_007259719.3 mRNA downstream 15583 18644455 ~ 18648875 (-) True nat9
XM_007259717.2 mRNA downstream 54039 18581880 ~ 18610419 (-) True grem2
XM_007241903.2 mRNA downstream 994733 17668664 ~ 17669725 (-) True LOC103035822
XM_022670308.1 mRNA downstream 999197 17648451 ~ 17665261 (-) True LOC103035515
XM_022670315.1 mRNA upstream 7394 18696994 ~ 18728233 (-) True LOC103028095
XM_022670316.1 mRNA upstream 40443 18730043 ~ 18741304 (-) True LOC111192624
XM_022670896.1 mRNA upstream 433020 19122620 ~ 19143280 (-) True LOC111192707
XM_007239985.3 mRNA upstream 748033 19437633 ~ 19459375 (-) True LOC103025356
XM_022670332.1 mRNA upstream 833102 19522702 ~ 19570378 (-) True LOC103025665
TU70997 other downstream 2074675 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2074675 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 2236845 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 2437284 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 2479146 16182735 ~ 16185312 (-) True G52493
TU71983 other upstream 1160350 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 1612935 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1992211 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 2094138 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 2128239 20817839 ~ 20819409 (-) True G53607

Expression Profile