RNA id: XM_007260763.3


Basic Information

Item Value
RNA id XM_007260763.3
length 1926
RNA type mRNA
GC content 0.35
exon number 2
gene id LOC103035302
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25541306 ~ 25544527 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAGCCGTTACTACTGAGCATGCGCAGAGAAACTAGCCGACTAGCCTTCTTCTAAGCAACCAGACTGAAGAGCAAATCCAAAACCTCCTTTTTGTCAGTGTTCAGAATTAAGAAACCACAAGGCCAACGGTGATATTCTTGCTGTACTgcattaatggatggatggatgtatgctTGCATTATAAAGACAACCAAGAAAACCAGCATGATTTAATGCTCATAACGCATAGGAACCTTGAGGACTTCCCATGTCGTGTTTTGAAAAAATTTACACCTTGGTTTCCATCTGGTGCTGACAAATATTTGCCAATCAAACCTAAAAAGGCTCCCCCAGTAATTTCACCCAAGCATTTAAAAAGTGCCAGATGCTGCCTGCAGAGGGAAGAGTTTGTTGTTCTCAGTTGCTGTCCTGATGATGAACAATTTGAAGAGGCCCGCAAGAGAAAATTTGCAACAAGCTCAGAAGGCATCGATGGAGAGTGGAATAATGCACAACTTGAAAATGAATCAAAGAAATTTAGACGGTCATGGAGTGTCTTttcacataaaacaaaaacagctgaGAGCGTACAGCCATTCTCTAGACAGTTCCACATGGCTATTCAGACATTTGGACTTCACCACCACCAGAGAGCAAAATGGATTATTTGTGAGCTAAACTGTGCACCAAACAGTATTGAAGAGGTCTGGTCCAGACTCAGCCATGCCATTAAGCACTCCAGGCTTCCAACATGCAATGCTAATTTACAGAGGAGTTTGGCACAGATTTGGGTTTACTCAGATGTGTTTTACTGTGAATATATTGGTCATTTCTTGAGACACAAATTACAGCTCTCAGGGGAGATTAATTTAGCAGTCCATAAACTGGggaacatttttaagttgtaaatatgtTGTAGATTGTACAGTTAATGTTTTTACTACAGCCAAATCATTAAGGAACAAGTCCTGATTGGCTGTCACTGATTTCTaaattttcaataaaatatgttGTGGACAACATGTTAAGGCAAAAATCTATGAAATCTATTGtcattaattgtaattaattaaataattattgtcaTTGTTCATTGTAAGTTTTGAAAGTCCATATATTAACGTCTGAAATTTGATTGAACTTAAAATGATTTTCATGGTAGAAGAAGTCATTGTCAACATgatatggacatgacctcaatattttattatgctgacctcaatattgcATATTTAGTTGACTTTGTAAGAAAAGCAGAGTAACATAAGCTGGTATGTcaactttattacattttttattaattattgtatttatttatgtatttaaacattttttccagagtctaaatatccaaaatattatataaaataacgtgtaaatgcataatttatttctttttgtaaaTTGGAATTTACACATGCATCTGAAAGAAGTATGAATTTGGatataaaatgtttagtgtCTAACTACTTTGAGTTTCAGACACACTGCGAATGTTCTTGGCAGTTattaaaatctacttttttgAGCAGTAAGAAAACACAATTtagcattttaataaatacaaataaatgtaagtACTGTAGACTATTAGTGTAGTCCAGCACGGTTTGTAATTTCCATGCTCTAAGCCTATGTTTAGTCCACAAGTCAAGatctgatttttggcatatctagattggTCCAGATAGATTTTTGATAGTTTAGACAGCCAGATACCATATTAAATTTCAAGGTGGTTTAAAATCTAATTGCAATTGCAATTAGTATGCGCCTTAGTCTGGTCCCTCTAACTGGATTTTAATGTTCCTTGTCTTGGAATGTGACTCAAGGGTCTATCTAAGGTCCCTCTCTCAAATGTCTCAATAAATGCAATTTGGGCTTTATTTTCATGCATTGCATTTGTAGTTCcgaaatttaataaaatttcaCTGATTTTACGACA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73402 lncRNA downstream 16137 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA downstream 16137 25524519 ~ 25525169 (-) False G54448
TU73284 lncRNA downstream 194609 25333400 ~ 25346697 (-) True G54358
TU73420 lncRNA upstream 5794 25550321 ~ 25562139 (-) False fam240a
TU73430 lncRNA upstream 57890 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 85268 25629795 ~ 25633221 (-) True G54471
TU73463 lncRNA upstream 104927 25649454 ~ 25694995 (-) True G54486
TU73467 lncRNA upstream 183856 25728383 ~ 25728601 (-) True G54490
XM_007260769.2 mRNA downstream 907 25532060 ~ 25540399 (-) True LOC103036837
XM_015608712.2 mRNA downstream 21080 25510629 ~ 25520226 (-) False LOC103035606
XM_007260765.3 mRNA downstream 21080 25510629 ~ 25520226 (-) False LOC103035606
XM_007260767.3 mRNA downstream 23715 25510629 ~ 25517591 (-) True LOC103035606
XM_007260770.3 mRNA downstream 35760 25486562 ~ 25505546 (-) True LOC103037139
XM_022670400.1 mRNA upstream 4823 25549350 ~ 25562067 (-) True fam240a
XM_015607074.2 mRNA upstream 67595 25612122 ~ 25621265 (-) True lrrc2
XM_007254050.3 mRNA upstream 67595 25612122 ~ 25619657 (-) False lrrc2
XM_022670401.1 mRNA upstream 67595 25612122 ~ 25619657 (-) False lrrc2
XM_007254049.3 mRNA upstream 67595 25612122 ~ 25619657 (-) False lrrc2
XR_002650051.1 other downstream 663284 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 1189370 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2449331 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2693969 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4721897 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 21747 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 22614 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 22866 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 23118 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 23370 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile