Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007260769.2 |
| length | 2586 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 16 |
| gene id | LOC103036837 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035902.1 |
| NCBI id | CM008305.1 |
| chromosome length | 52532229 |
| location | 25532060 ~ 25540399 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0019538 | protein metabolic process | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0044267 | cellular protein metabolic process | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU73402 | lncRNA | downstream | 6891 | 25524104 ~ 25525169 (-) | True | G54448 |
| TU73401 | lncRNA | downstream | 6891 | 25524519 ~ 25525169 (-) | False | G54448 |
| TU73284 | lncRNA | downstream | 185363 | 25333400 ~ 25346697 (-) | True | G54358 |
| TU73290 | lncRNA | downstream | 188647 | 25341697 ~ 25343413 (-) | True | G54360 |
| TU73288 | lncRNA | downstream | 191180 | 25337766 ~ 25340880 (-) | False | G54358 |
| TU73420 | lncRNA | upstream | 9922 | 25550321 ~ 25562139 (-) | False | fam240a |
| TU73430 | lncRNA | upstream | 62018 | 25602417 ~ 25605207 (-) | True | G54466 |
| TU73444 | lncRNA | upstream | 89396 | 25629795 ~ 25633221 (-) | True | G54471 |
| TU73463 | lncRNA | upstream | 109055 | 25649454 ~ 25694995 (-) | True | G54486 |
| TU73467 | lncRNA | upstream | 187984 | 25728383 ~ 25728601 (-) | True | G54490 |
| XM_015608712.2 | mRNA | downstream | 11834 | 25510629 ~ 25520226 (-) | False | LOC103035606 |
| XM_007260765.3 | mRNA | downstream | 11834 | 25510629 ~ 25520226 (-) | False | LOC103035606 |
| XM_007260767.3 | mRNA | downstream | 14469 | 25510629 ~ 25517591 (-) | True | LOC103035606 |
| XM_007260770.3 | mRNA | downstream | 26514 | 25486562 ~ 25505546 (-) | True | LOC103037139 |
| XM_007260802.3 | mRNA | downstream | 48076 | 25473885 ~ 25483984 (-) | True | LOC103046226 |
| XM_007260763.3 | mRNA | upstream | 907 | 25541306 ~ 25544527 (-) | True | LOC103035302 |
| XM_022670400.1 | mRNA | upstream | 8951 | 25549350 ~ 25562067 (-) | True | fam240a |
| XM_015607074.2 | mRNA | upstream | 71723 | 25612122 ~ 25621265 (-) | True | lrrc2 |
| XM_007254050.3 | mRNA | upstream | 71723 | 25612122 ~ 25619657 (-) | False | lrrc2 |
| XM_022670401.1 | mRNA | upstream | 71723 | 25612122 ~ 25619657 (-) | False | lrrc2 |
| XR_002650051.1 | other | downstream | 654038 | 24787194 ~ 24878022 (-) | False | svil |
| TU73059 | other | downstream | 1180124 | 24341400 ~ 24351936 (-) | True | G54205 |
| TU72809 | other | downstream | 2440085 | 23091306 ~ 23091975 (-) | True | G53996 |
| XR_002650112.1 | other | downstream | 2684723 | 22846676 ~ 22847337 (-) | True | LOC111192727 |
| TU72277 | other | downstream | 4712651 | 20817839 ~ 20819409 (-) | True | G53607 |
| trnak-uuu | other | upstream | 25875 | 25566274 ~ 25566346 (-) | True | trnak-uuu |
| trnak-uuu_1 | other | upstream | 26742 | 25567141 ~ 25567213 (-) | True | trnak-uuu_1 |
| trnak-uuu_2 | other | upstream | 26994 | 25567393 ~ 25567465 (-) | True | trnak-uuu_2 |
| trnak-uuu_3 | other | upstream | 27246 | 25567645 ~ 25567717 (-) | True | trnak-uuu_3 |
| trnak-uuu_4 | other | upstream | 27498 | 25567897 ~ 25567969 (-) | True | trnak-uuu_4 |
