RNA id: XM_007260770.3


Basic Information

Item Value
RNA id XM_007260770.3
length 4391
RNA type mRNA
GC content 0.45
exon number 26
gene id LOC103037139
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25486562 ~ 25505546 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGGAAAACGGAGCCCGTTTTCTCTGCCTGACAGCGGTGTGGAGATGCGCGAAAAACCGCGCCAAATTTAGACGTTTTATCAGCGCgtctgagagagaagagatacCGCGTTAAAAAAATTACCACCTCGCGCGCGTTTCAGAATGTCAGACCCATCCTCATCCCCTCCGCCTGGACAGAAGCCCGCGCTGAAATCCACACCGAGCCGCTTTCAAGTAGCCCCGGTCTCAGACTCAGCATCAGCATCCTCAGCAAGCGGAGCTCCGAGAACTCCTCCAAGATCCAGATCTTCATCAGCAGGACGGGCATCCGAGGGACCTTCCGGCGGAGAGGAGGCCAAGGGTCGGTTCCGTGTGGTAAACTTTCTGGACCCGTCAGGAGCTCCTGCTGAAGGAGGGTCTGATTTTGGTTTTAACGGGGACACGGTGAGGAGCGAGGCCAGCCTGCACTCCTCCACAGGGGGTCTCAGCCACTTCTCGGACACCCACTCCAGCACCTATTACCTGAGAACCTTCGGGCACAACACCATCGATGCAGTCCCGAACATTGACTTCTACCGGCAAACGGAGGCAACTCTCGGGGAGAAACTCATCCGACCGTCGCTATCCGAACTTCATGATGAGCTGGACAAAGAACCCTTTGATGAGGGGTTTGCAAATGGAGAAGAGCCAGCTGCTGCAGAGCAGGCTGCAACGAAAGTGGCACCTGAGTCCAAAGGGGGCACAGTGAAGTTTGGATGGATAAAGGGCGTCCTGATACGATGTATGCTGAATATCTGGGGAGTGATGCTTTTCATTCGGATGTCGTGGATTGTTGGTCAAGCAGGCATTGCTCTGTCTTGTGGTATAATTCTAATGGCTGTTGTGGTGACCACTATTACCGGTCTCTCCACCTCAGCGATAGCCACCAATGGCTTTGTGAGAGGAGGTGGAGCATATTATCTGATATCTAGGAGCTTGGGCCCAGAGTTTGGTGGATCTATTGGCCTCATTTTTGCCTTTGCTAATGCTGTTGCTGTTGCCATGTATGTTGTGGGTTTTGCTGAAACTGTGGTGGAGCTCCTGGATAGTGTAGATGCTCTCATGACGGATGAGATCAATGATATCCGGATAGTTGGCACTCTTACCATCATCTTACTCCTTGGCATATCTGTAGCAGGAATGGAATGGGAGGCTAAGGCCCAGATTGTGTTGTTGATCATTCTCGTGGCAGCAATCTTTAACTACTTCATTGGCTCATTCATCCCCATGGAATCAAAGGAACCTAAGGGCTTCTTTGGCTATAATGTCGCAATCCTGTTAGAGAACATGGGTCCAGATTTTAGGGATGAAGAAacctttttctctgtctttgcCATCTTCTTTCCAGCTGCAACAGGGATTTTAGCAGGAGCAAATATCTCAGGAGATCTCTCAGATCCACAGTCTGCCATTCCTAAAGGAACCCTGCTATCTATTCTCATAACTGGTGTTGTTTATATCGCAGTTGCCTTTTCTAACGGCGCCTGCATTCTACGAGATGCTACAGGTGAAGATAATGACACCATTATAGGCTCTCTGGAGAACTGCACAGACGCAGCCTGTACGCTCGGCTATGACTTCTCCATTTGCAAGGAGGGCGGCTGCAAGTACGGATTAATGAATGATTTTCAGGTTATGAGCTTGGTCTCTGTATTTGGGCCGCTTATCACTGCTGGAATCTTCTCTGCCACTCTTTCATCAGCTCTTGCTTCACTGGTCAGCGCTCCCAAAGTGTTTCAGGCTCTGTGTAAGGATAACATCTATCCTGGCTTGCGGATTTTTGCTAAAGGATATGGTAAAAACAATGAGCCTCTGCGTGGCTATGTCCTCACATTCTTCATTGGCTTGGCCTTCATTCTAATCGCTGAGCTAAATATTATTGCTCCCATCATTTCCAACTTCTTCCTGGCCTCTTATGCCTTGATCAATTTCTCTGTCTTCCATGCATCACTGGCAAACTCCCCAGGCTGGCGTCCAAGTTTTAAGTATTACAATAAGTGGGTGTCACTGGCTGGAGCAGTGCTGTGCTGCGTGGTTATGTTTGTAATCAACTGGTGGGCTGCCCTCCTTACTAATGTCATTGTTCTGGCATTGTACATATATGTCAGCTACAAGAAGCCAGATGTGAACTGGGGATCATCTAGACAAGCTTTGATGTACAACCAGGCCCTGGCACACAGCCTGCATTTAACTGGTGTTGAGGACCATATCAAGAACTTCAGACCACAGTGCCTGGTGATGATTGGCTACCCCAATGCAAGACCAGCATTACTTCACCTAGTGCATGCTTTCACAAAAAATGTGGGTCTGATGATCTGTGGCCATATTCGCATGgGTTCCCGAAGGCCAAACTATAAGGAGATGATGAATGATCAAATCCGCTACCAGCGCTGGCTTCTCAAGAAACGGATCAGGGCTTTTTATTCTCCTGTGTTTGCTGAGGACCTCAGACAAGGAGCCCAATATCTACTACAAGCTGCTGGTTTGGGACGTTTAAAGCCAAACACTTTAGTGTTTGGCTTCAAAAACAATTGGCGAGATGGGGACATGAGAGATGTGGAAACATACATCAACACAGTTCATGATGCATTTGACCTACAGCATGGTGTTGTTATTATAAGACTGAAGGAAGGTCTTGATATCTCCCACATTCAAGGCCAAGATGAGTTTATGTCATCCTATGAGAAAGCTCCAGTAATGAAGGAACTGTTGGTGGCTATCAGCATTGGAAAAGATATGGACAGTGATTCCTCAAAACCATCGTCTAAGACCACCAGTTGTCAAAGCAGTCCACTCATCATAAGAGACACCAAGGGTCCTTCTGTGCAGCTTAGCATTGCAGATGAGAAGCTGCTGGCAGCTAGTCAGCAGTTCAAGAAGAAACAGTGCAAGGGCACTATTGATGTTTGGTGGCTGTTTGATGATGGAGGATTGACACTGCTGATTCCATATTTGCttacaaacaagaaaaaatggaaaGACTGCAAGATCCGTGTATTTATTGGTGGAAAGATCAACAGGATTGATCATGATCGCAGAGCaatGGCTGCATTGCTGAGTAAGTTCAGGATTGCCTTCTCTGACATCACTGTTCTTGGAGATGTGAACATTAagccaaaaaaacacaaTAAAGAAAGGTTTATGGAGATGATAGAGCCATATAGGTTGAAGGAGGAAGATATGGAGCAGGAGGCTGCTGAGAGACTGAAGGCTGAGGAGCCGTGGAGGATTACTGATAATGAACTGGAATTGTACAGGGCCAAGACTAACCGTCAAATCAGATTGAATGAACTGCTGAAGGAACACTCAAGCACAGCAAATCTCATTGTCATgaGCATGCCACTTGCCAGGAAGGGAACAGTGTCCAGCGCTCTCTACATGTGCTGGCTGGAGACATTATCTAAAGATCTCCCACCGATTCTGCTTGTGAGAGGAAACCATCAGAGCGTCCTAACCTTCTACTCATAAAAGCATGTAAAAATGCGTTTTGGAAGCACAAGGACAGTACACTGTTACAATCAGTATGGCTGTGTGGTGACCTGCGTCTTGTCAAAtcttcatttatcatttatttcttcATATGGAAGATGTTATGCCAGTTTAACCTGCTaactaaacaatatatttatttgattacttatttgtgttttatatacagtggCATAGTTTGGTTTTGGTTACTGTAAATAGTTATGTAAAATTTTTGCTTAGCGTCCAGATTTGATAAGTTCAATCCATCATACATTTCTCTACCGGTGAAATGTGCCTTGTGCCACTTGCTGCAGCACAACTGCAAAGCATGATCGATCAGCCTCTGTACGTAACAAATTTTGGACCCTTTTgtctacaaaaaaaattgtttcccAAATGTCTTGTATAGATGCTTCTTGaccaggggtgcccaaattttgCAAGCTATTGTAACACTTGTGGCTCAGCAGACCAAGATGCTGACACCATGGCCAAAAGGTCATTTTGCTTCACCATCAGTGGTCATTGTGATGCTGTCCAGCACAGGTATCTGTTGGCtgagagctggggatctggtgaTTTCCTCAGAGAGTATTTACTGGCTAGTAATGCTGCAATGGCAGCACTGCAATTGCTAGTGGGAGTTagtgggagtcctaatgagtagaTGGGTTAATAGGCTAAGCTAaattaggttaaaaaaaaaaatggatcaaaaTTCTTTGAGGCGATACATTTTTATAGTTGGAACAGATCCacctacttttttttattttgtatgcatgtaaataaattaataaatacttaattttgatcaggatttttaaacaaatattaatgttagcccaataatacattaataaacttTAAACAGGGTCAACAGAAGATTTGAatggcta

Function

GO: NA

KEGG:

id description
K10951 SLC12A2, NKCC1; solute carrier family 12 (sodium/potassium/chloride transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73284 lncRNA downstream 139865 25333400 ~ 25346697 (-) True G54358
TU73290 lncRNA downstream 143149 25341697 ~ 25343413 (-) True G54360
TU73288 lncRNA downstream 145682 25337766 ~ 25340880 (-) False G54358
XR_002650052.1 lncRNA downstream 194588 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA downstream 260359 25225020 ~ 25226203 (-) True G54338
TU73402 lncRNA upstream 18558 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA upstream 18973 25524519 ~ 25525169 (-) False G54448
TU73420 lncRNA upstream 44775 25550321 ~ 25562139 (-) False fam240a
TU73430 lncRNA upstream 96871 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 124249 25629795 ~ 25633221 (-) True G54471
XM_007260802.3 mRNA downstream 2578 25473885 ~ 25483984 (-) True LOC103046226
XM_022670901.1 mRNA downstream 14596 25451112 ~ 25471966 (-) True cep120
XM_007260773.3 mRNA downstream 95855 25385690 ~ 25390707 (-) True ppic
XM_022670391.1 mRNA downstream 387458 25071454 ~ 25099104 (-) True mtpap
XM_022670385.1 mRNA downstream 488442 24950612 ~ 24998120 (-) True jcad
XM_015608712.2 mRNA upstream 5083 25510629 ~ 25520226 (-) False LOC103035606
XM_007260765.3 mRNA upstream 5083 25510629 ~ 25520226 (-) False LOC103035606
XM_007260767.3 mRNA upstream 5083 25510629 ~ 25517591 (-) True LOC103035606
XM_007260769.2 mRNA upstream 26514 25532060 ~ 25540399 (-) True LOC103036837
XM_007260763.3 mRNA upstream 35760 25541306 ~ 25544527 (-) True LOC103035302
XR_002650051.1 other downstream 608540 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 1134626 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2394587 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2639225 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4667153 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 60728 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 61595 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 61847 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 62099 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 62351 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile