RNA id: XM_007260773.3


Basic Information

Item Value
RNA id XM_007260773.3
length 2704
RNA type mRNA
GC content 0.36
exon number 5
gene id ppic
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25385690 ~ 25390707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaaaaaaaaatcaccggATACGTGAAATTCCAGCTTGTGGATACAAGCAAGCCAGCGGTGCTGAGACTCCTGTACAGCAGTAGCAGCCATGCGCTGGGTTAATGTGCTGCAGAAATGCCTGCTGCTTTATTTACTACCATTTCTAGCAAACGTCGTGGACTCTAAAGCCAGAATTGGTCCAAAGGTGACGGATAAGGTGTTTTTTGACATCACAGTTGGAGGACATGAGGTTGGCAGGATTGTGATTGGGCTGTTCGGAGAGGTCGTCCCCCTTACTGTGAACAACTTTGTTGCTCTTGCCACTGGAGAGAAAGGTTATGGTTACAAAGGCAGCAAGTTCCACCGTGTCATCAAAGACTTCATGATTCAAGGAGGTGACTTTACAGCGGGAGATGGAACTGGAGGTAAAAGCATCTATGGGAAGACGTTTGCAGATGAAAACTTCAAGCTAAAGCACCAGGGAACCGGCTGGGTCAGCATGGCTAATGCAGGGCCCGACACCAACGGCTCGCAGTTCTTCATCACTTCTGCCAGGGCTCCGTGGCTGGATGGCAAGCATGTTGTCTTCGGCAAAGTCTTGGAAGGCATGACTGTGGTTCATACCATTGAGCTCCAGGACACGAATGACCGGAACATGCCCTACACAGAGTGTGTGATCGTGAACAGTGGAAAGATTGAGGTCAAAGAGCCTTTTGTAGTAGAAGTGGAAGGTTGGTAGTGAAAGGTTGGCACACCAGACTGGGACTAGAGCCCAAACGATATATAATAGATGgctaataaaaagaaagatgtATTGGTTCCATGTTTATCATTATCACAGTAGTTGATAAAactgtattattactattagaaagtttaataaacattaaagaaaatattaaaattacccCTACTGTTAAAAATGATATAGTCAAAAGACTATAAGTACAATTgctgttgatgttttttttttctgtattgccATGGAGGGTTGCGTACTGTAGTGAGACAAAACACTGATGGATGAAAAATGAAACTGTGTTGCACTACAGACTATAACAAAACATTGCAAATAGTTCACATTTACTAATAGTTCCAGGCTGGATTGCTCCTTTAAGTCTTCTCCTATGCACTCATGATATAAGAAagaacatataataatatattattgcaAAGAGTGAGAAACCTCTAAAGCAGTGATTGCCAGGCCTGCTTCTTGGCATCTGTCTTCCatgctgatttaaaaaaaaaaaaaaaagcaaatataagtaaataatgaTTACTAAGAATGAGCTGAGCCTAATGTATTAAACTTGGGCTGAAAGAAAACTCTGTAGGGAagtgtacaaaataataaaaataagaaataaccaCTTAGCTTCATACAAACTTTAAAGACAACAGTTTACATACTTAATATCAAATCAGATACCACTCAGATATAATACCACTAATCTAAAGGTGCCACTGTGTTATTACCATTACGTCATGTCGCCACTTTACTGTTAGTTTACAGATTATTTGTTCAATAGGGAATCCTGTAATAGCTAGGTACCTAGTTTGTCAGTCAGTGTTAGATGTGCTAGAGGATAGCTGGACACATATCATTGAATTAGTTGTAGTATTAGATGGACATTTGTTGTTGGAATGAACTACCTAATATTCTGGTAGCCCTTCATCATTTTCGTGTTTgtgtttgaacatttttttgtgtatgcTTTATACCTCACTTAGCTTGGAACAACACATATATAGAGATGTTTATATTTCAGCTAAATtaatatatgatttaaacattttaacataagACAGCTAATGGGAGCAAGGTAAGGTCTTGACTTTGAGGTACTGATTAAATAAGCTGTTAGCATTCCTGACTGTACGACAacgtttacacctggtcacttcaagAAACTGGCATCTGATTTTTATCTTACTTGAAATactactataaaatatatatatattataaaattacccaacccactcactggGATTCCCCCTATTACTGGTGTTGCTGTTGTGCATTTCtttatatgtacatttttatgtggtctccCCTTATCTGGATATAACCCTGATACTCAACACCTTAAGTTACCAGGTGTAAAAGAGGTATATTTCCATTTGTTTAACTCACTACTGTTTATGTAGAACTTGATATTATCTGTAAAACATATCACGATCATTTTACGTATCGTAAAGGTCACAATAATATGCATATTTCATCACGAGTGCCAAATATTTATGCATTTTGCTGCCAAATTTGCTTAGCAGATTTAAAGTGGATCTTTTTATTGTGATGTTTTATATTACAGGCAAATTTCTTGATATTAATATTCCAGAGAGTGCCAATACTTAAAATCCGTGTGTGTTGTTATTTAGCCTCATTACATTAGTAGTTTAGCGTGCTGAAATTAAAATTTGctaattttaaacaaaactgtaatacatACAGAGAAGGTTGTTTATATCTTATCAAATCCTACCAGTTTAACtggtaaaaaattaattaatttttaaatataaaaaatgttgggtttttttgttggtttttaaACTTCATGCCCATTTGTGTAGTAcactaaatgtatttatttaaaaatatataaatgcatttttcataTGTTCCAGACAAATTCAAtcatactttaaaatgactgtGATTAACTTGCTTCTGAATCCAACcatatctgaaataaaataatttacccTTGTGTAAA

Function

GO: NA

KEGG:

id description
K09563 PPIC, CYPC; peptidyl-prolyl isomerase C (cyclophilin C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73284 lncRNA downstream 38993 25333400 ~ 25346697 (-) True G54358
TU73290 lncRNA downstream 42277 25341697 ~ 25343413 (-) True G54360
TU73288 lncRNA downstream 44810 25337766 ~ 25340880 (-) False G54358
XR_002650052.1 lncRNA downstream 93716 25099176 ~ 25291974 (-) True LOC111192641
TU73250 lncRNA downstream 159487 25225020 ~ 25226203 (-) True G54338
TU73402 lncRNA upstream 133397 25524104 ~ 25525169 (-) True G54448
TU73401 lncRNA upstream 133812 25524519 ~ 25525169 (-) False G54448
TU73420 lncRNA upstream 159614 25550321 ~ 25562139 (-) False fam240a
TU73430 lncRNA upstream 211710 25602417 ~ 25605207 (-) True G54466
TU73444 lncRNA upstream 239088 25629795 ~ 25633221 (-) True G54471
XM_022670391.1 mRNA downstream 286586 25071454 ~ 25099104 (-) True mtpap
XM_022670385.1 mRNA downstream 387570 24950612 ~ 24998120 (-) True jcad
XM_007259653.2 mRNA downstream 406055 24950612 ~ 24979635 (-) False jcad
XM_022670370.1 mRNA downstream 507669 24786251 ~ 24878021 (-) True svil
XM_022670901.1 mRNA upstream 60405 25451112 ~ 25471966 (-) True cep120
XM_007260802.3 mRNA upstream 83178 25473885 ~ 25483984 (-) True LOC103046226
XM_007260770.3 mRNA upstream 95855 25486562 ~ 25505546 (-) True LOC103037139
XM_015608712.2 mRNA upstream 119922 25510629 ~ 25520226 (-) False LOC103035606
XM_007260765.3 mRNA upstream 119922 25510629 ~ 25520226 (-) False LOC103035606
XR_002650051.1 other downstream 507668 24787194 ~ 24878022 (-) False svil
TU73059 other downstream 1033754 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 2293715 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 2538353 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 4566281 20817839 ~ 20819409 (-) True G53607
trnak-uuu other upstream 175567 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 176434 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 176686 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 176938 25567645 ~ 25567717 (-) True trnak-uuu_3
trnak-uuu_4 other upstream 177190 25567897 ~ 25567969 (-) True trnak-uuu_4

Expression Profile