RNA id: XM_015601720.2


Basic Information

Item Value
RNA id XM_015601720.2
length 3832
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC103032914
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14355158 ~ 14388059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACACACGcgcacgcgcgcgcacacacacgcacacccgGGGGCACGAGGCGGGCTGGTCGAGCGCGAGATCATGTGAGAGTCCACGCGCTGAAAGTaggttacagagagagagacacagagagagagagatcgaaGCCgcagaggagaagagagaagtGCGTTGAATTTATTGCAAGCAAGTGCAGCGCGTGCATGCGTGCAAACAAGACAAACtagacaacaacaaaacaaccgCATTAGACTACAGTTCTGAACTTCAGGGACGCGCTTCAGGGAAACTTATGAGGTTTTGCCGCTCCGGTGTAAACGTTTACACCGCTCCGATCCGGAGCCCCGAACACTTCAGTTGGCTCGAGCCGACACGTTCAAATGTTCTGGAGTTGCATAATTATTCaaagataatattaataaccTAGATCCGGCATCAAGATGAGAGcTCAAATCGAGGTGATCCCGTGTAAGATCTGTGGAGATAAGTCATCAGGTATTCACTACGGCGTGATCACATGTGAAGGGTGCAAGGGTTTCTTCCGCCGCAGTCAGCAGAACAATGCCATGTACTCCTGCTCTCGGCAGAGGAACTGCCTGATCGACCGCACCAACCGCAACCGCTGCCAGCACTGCCGCCTGCAGAAATGCCTGGCCCTCGGCATGAGCCGTGATGCTGTGAAATTCGGCCGCATGTCTAAAAAGCAGCGGGACAGCCTCTACGCAGAGGTTCagaagcaccagcagtcccaggaGAGGACCAGCGGCCCCGGGGGCATTACTTTGCCCTCCCGCGTAAACGATGACATCGGAGAGAACGGTAACGGCGGGCACGGCCGGGCGTACAGccgcagcagctccagcacggCCCTCAGCGACCTGGACGACATCGGAGCGCTGCCGGACAGCCTGCTGTTCGACCTGCCGCTGACGCCGGAGGACGCCGGCGAGTACTGCAGCCTGGACCTGCTGGGGGGCAGCGGGGGCAGCAGCTCCTCCTCCCAGAGTTCCCCAGAACAGAGCGTGCAGGAGTTCAGCGATACGCCCCACATCAAACACGAGTACCAGCTCCTCCACGAGACCGgcatgtacacacactcaccgcTCAACGGCCAGCCTGAGGGATGCTCCCTGCTGGAGATAGAGCGCATCACTCAGAGTGTGGTGAAATCCCACGTGGAGACGAGTCAGTACAGTCCTGAGGAGCTAAAACGGCTCACCTGGAACCTCTACACAAGCGAGGAGACCCGCACCTACCAGAACAAGCCGTCAGAGGTGATGTGGCAGCAGTGTGCAGTTCACCTCACCAACGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGCATCACCGGCTTTATGGACCTGTGTCAAAACGACCAGATCATCCTCCTCAAAGCAGGCTGTTTAGACGTGTTGCTGATCCGGATGTGTCGAGCCTATAACCCCCTCAATCACACGCTGCTGTTTGATGGGAAGTTTGCCAGCCCACAGCTCTTCAAAGCACTGGGCTGTGATGACCTGGTGAATGCTGTATATGAACTGGCCAAGACCATGAGCCGTCTGCAGATGACCGAGGAGGAGATGGCCCTCTTCAGCGCCGCTGTGCTCCTGTCTCCAGACCGGCCGTGGCTGAGTGATAGCCAGCGGGTGCAGAGGCTGCAGGAGAAAGTGTACCTGGCTCTGCAGCGCTGCCTCAACAGAGGAGGAACCTCCGAGGAGAAACTGACCAAGATGGTGGCTAAACTGCCCATCATGAAGTCTATCTGTAACCTCCACATCGACAAGCTGGAGTTCTTCCGCCTGCTCCACCCCGAAACGGCGTACAGCTTCCCCCCGCTCTACAGGGAAGTGTTCGGCAGCGAGATCACCTTCCCCGACTCCACCGAGGGCTAGAGCCGGCCCGACGCGGCCCGCAGACtggtgctgagagagagagagagagacaaaaaaagagagagagagacaggactTTAGACAGGAAGCTGTAGGGATGATAAGAGGAAGAGGTGTGGTAGAATTGAGCGTCACAGGCAGACCAGCAGCTCACTGACAATCCTGCACGCATCACTTTAGAACTCCCAGCATCCCTTTCTTTAGGCTCCCTCCCACTTGGGGATACTGGAACCAGTACGAAAGCAGCCCCTCCTAGTTTTTTTAACTTAcgatgatttttatttttttttgtttgctattAAGAAAcagtctaaacacacacacacacacatacacacacacacacacacacagtgctgtgtagtcgagtgtgtatgtgtgtagatgCTACCTACTGAGACAAAGGCAGTGCTCCATTTTTATTGGAGACTGAACCTCTAAAATTGAAGTATTCTAATACAGCGGATTGGGACACAGCCGCCTGTTCTGTACCCTTTAGAGAAGAGACACTTGATGAATGTACCCTAGTGGATATGTGGCACAGCCGCCTCAGGAACGAGACAGAATGTATTAAGTGTGTTtgtcctcattttttttttgtttttttgttgttttgttttcaagCTTTTAAAGCtcgattttacttttttcttttttttttttagcagtttggTGTCACATGATCCCAAACCCAACTGTTTGGAGGGACCAATAGCAAGCAGACTTTATCATAACTGAGTCATTACTGTGTTGTTTTTAGCATTTCAGCATGCTAACTCAGAACTCAGTGTCCCTCATTTTGTAAAGTCAAAGCAAAGTCTGCCAAGTGTTCACTTAGCTGTGGTGTATTCTTAACTGAACAGCAGCTAATGTGCATGCTTTTATACAGGGATGTGTGCAGACGGTGTTtctgagcttttttttatttgtatttgatattatttttaattattaataatttaaaaaacgaaACCTCAGTCCCGCTACCTTTTCCCCTGCAAATGCCACTCtagaatgaaagagaaagtattttaatatttttctgtaattaaatTAGATACTAGAGAGATATATTTAGGGTAATAGAAGTGTTTGAAtaaagattttatatatatatatatataaatatatatatatagatatatatttatatgccgAATTGATCAGACACAAAGGTTAAGATATACAgatagatacagacagacagatagacaggtttagctagatagataagACAGAAAGACAGCATGAAAGGAAAAGCAccataaaaaaagacagaatgaatgaatgaatgttctCAACGCCCTTCAGAaactggctttaaaaaaaaaagcttattggCCGAAACCGGGCCGAGACCGGACCGAACCGAGACCCGAGTCGCTGCCTCAAGAAAGCTCTGGATTTTGAGGCAGGCGGAAAGCACTTACGAACTTCGAGAACTCCCACAAACCCCACAAATCTGGGAACTTAGAACTTGGACCTTCAGAACCAGCTCTTCCTTCAGAACCAGCCTACACCTCACTCAGGATTGCCTCACcagaacacactcacacactcccatTACACTCAAAAACTAACTGGACAATGCTGTGGCCAGCAGCCTCAATCTGAAGTAGAACTGGAACTTTACCCACCACCTACTGAAGTGCTTGAACACTGGGAATGCTGGGAATGGAACAGTATATTTGGATTTACTCGGTTCAAATGTGTGCATCACTCATGTTAGCGCTAGCATTGATTAGCATGACGAGCTGGTAGAGGAAGGGAGGGGTCTAATTACTGTATTCCCGCTTGAACAGCTTAGACTTGGATGAAATTCATGTCTATGTATTGCTGTGTGCAGATAAACTGACACTTAGACTGTTGCGCCACCCAGGCCCCTAGACACTctgaataagaataagaattagaataagaataagatgGGTTATTGAAATTGgaatttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70322 lncRNA downstream 15878 14310659 ~ 14339280 (-) False G52123
TU70318 lncRNA downstream 42207 14306209 ~ 14312951 (-) True G52123
TU70319 lncRNA downstream 42207 14306209 ~ 14312951 (-) False G52123
TU70330 lncRNA downstream 101730 14251437 ~ 14253428 (-) True G52130
TU70331 lncRNA downstream 139296 14205118 ~ 14215862 (-) True G52131
TU70402 lncRNA upstream 73877 14461936 ~ 14490015 (-) True G52194
TU70433 lncRNA upstream 133296 14521355 ~ 14566614 (-) True G52217
TU70434 lncRNA upstream 139160 14527219 ~ 14528579 (-) True G52218
TU70428 lncRNA upstream 166884 14554943 ~ 14561035 (-) True G52215
TU70447 lncRNA upstream 276213 14664272 ~ 14664828 (-) True G52227
XM_007234783.3 mRNA downstream 6154 14301143 ~ 14349004 (-) True sh3gl1
XM_007234784.3 mRNA downstream 6156 14301143 ~ 14349002 (-) False sh3gl1
XM_007234786.3 mRNA downstream 78495 14255068 ~ 14276663 (-) True LOC103033235
XM_022670257.1 mRNA downstream 133645 14211590 ~ 14221513 (-) True cpox
XM_007234791.3 mRNA downstream 168091 14166669 ~ 14187067 (-) True tmem47
XM_022670265.1 mRNA upstream 118675 14506734 ~ 14525266 (-) True LOC107197797
XM_015607566.2 mRNA upstream 118675 14506734 ~ 14513494 (-) False LOC107197797
XM_022670267.1 mRNA upstream 171969 14560028 ~ 14773427 (-) False LOC103032692
XM_022670266.1 mRNA upstream 171969 14560028 ~ 14773426 (-) True LOC103032692
XM_022670269.1 mRNA upstream 722213 15110272 ~ 15128265 (-) True LOC103046390
TU70092 other downstream 691044 13663401 ~ 13664114 (-) True G51960
TU70078 other downstream 764315 13565998 ~ 13590843 (-) True LOC111192615
TU69924 other downstream 1031475 13285303 ~ 13323683 (-) True smim24
TU69280 other downstream 3150735 11204054 ~ 11204423 (-) True G51346
TU69071 other downstream 4038691 10313482 ~ 10316467 (-) True G51187
TU70366 other upstream 20877 14408936 ~ 14411611 (-) True G52161
TU70552 other upstream 688237 15076296 ~ 15084568 (-) True G52299
TU70793 other upstream 1794676 16182735 ~ 16185312 (-) True G52493
TU70803 other upstream 1838177 16226236 ~ 16227174 (-) True G52503
XR_002650036.1 other upstream 2018660 16406719 ~ 16427613 (-) False zcchc4

Expression Profile