RNA id: XM_022670269.1


Basic Information

Item Value
RNA id XM_022670269.1
length 2342
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103046390
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15110272 ~ 15128265 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctgggGCTGATCTGGGCTGAGCTGTctctccgctccgctctgcaccAATCACATTCTCCTGACCTATTATGGTTATGAGCGTGACAGCCCGTGTACCCATGATGCGCTGCGGGCTGAGGCTGGTCTGCTGGAGCTAAGATGACCGACTTTGAGGAGCCGCTCTCCGACGAGGAGAAGGTCCGCATAGCAGCTAACTTTGTCACCCATGCTCCGCCTGGAGAGTTCAATGAAGTCTTCAACGATGTGCGGCTTCTCCTCAACAATGATAACCTCCTCAGGGAGGGGGCAGCACATGCCTTTGCCCAGTACAACATGGATCAGTTCACCCCTGTTAAACTGGAAAATTCGGAGGAGTCGGTTCTGATTACGGAGCATGGTGACCTGGGTCAGGGACGGTACTTTGACCCACGAACCCGCAGGTCGTTCCGTTTCGATCACCTGCGTAAGGAAGCCAGTGACCCGCAGCCCTACCAAGGAGAGACCGCTTTGCACTCTTGGAGAGATGCCTGTGACACTGCACTTAGTGCCTACGTCAAAGAGCACTACCCTACTGGAGTGTGCACGGTATACGGGAAAACAGTGGACGGTCAGAAGACCATTATTGCCTGTATTGAGGGTCACCAGTTTCAGCCTAAAAACTTCTGGAATGGTCGTTGCAGGTCAGAATGGAAGTTCACCATCAGCCAGTCCTCCTCTCAGGTGGTGGGAGTGTTGAAAATACAGgtgCATTACTATGAGGATGGTAACGTTCAGCTGGTCAGTCATAAAGAAGTGGAGGAGTCCATCATAGTATCTGATGAAGAGTCAACTGCCAAGGAATTTGTAAAAATTATTGAAAATGCAGAAAACGATTACCAGACGGCCATCAGCGAGAACTACCAGACGATGTCGGACACGACATTCAAAGCTCTGCGCCGGCAGCTTCCTGTTACCCGCACCAAGATCGACTGGAACAAGATCCTCAGCTACAAGATCGGCAAAGAGATGCAGAACGCCTAGAACCCGCATGGTtccgcctctctctctttctctctctcaacgCAGAACCGGTCAAAACCAAAACTACATGCTGTTCGCTAACCAGAGGGAGAATGCCCccattgaaaaaaatgaaaaaaagaaacaaacaaaaaatgacgAAACAAATAATGTCAATGAACTTCAACTGTTCATTCGTATCGGTGTTACAAAGAGGATGCGATTCCATTCGGTTTCTGGTTCGTTAAAGGACTCGGTCCGGTCTCAGCTATTGGAGGAGGGTCAGACGAGAGCTTAGAGGGAGTTTGGATCTAAATTTTATCGGTCAGTCCGATGTTTAGTCTTGCGTTAACGTAAATTCATCTGTCCCGTCTGTCCTAAAATTCTCGGAAAATCTCGGAAAGGGTGTAAATCGTAGTTATTTTTGTcgttctttttctttgttaatgTTATCGTCGTCGTCGTCATCGTTCTTGTTATGAGATGCTTGTGAGTACGATTTAATAATTGTCTTATTATGTAAGATAACGGCACGGAGAACTGCTGTCTAACTTGGTAACTACTGACTCCAGCCCAAAACTCGTGAACAAACCTCTTTTCTGCGTCTTTCGTTTCTTCTTAAAGCTTCTAAACTCATCcctgtaggagtgtgtgtgaggagaagAGGCTTGTTCAGTGACTTTTGGAATCATTTGGAAAGACTCTGTCTTAACTCCCCTCTCTCAGTATCTCCCTCCACCTGTAACTCAAAACcttccccccaccccccctatAAAAACGGCTTCAAATGACCTTCAAAATCGACCTGGAATTAGTGTGCAAAATATAgaaccagccaaccaaccaaccaattaaaaaaaagaaacctcgTCCTCTTTCCCATGGCAAAAGAAATCCAAATTTAAGTCttcatatttatacatacagaTGTTATATTTTACTAAGCAGTCCTTAAGAAAAAGCTACATCCGAGCACTCCTTTGTTACAGGCCTCACGTGCGCTTTCTGGGGTGTGCCGCCGAATCGAACGAGTCTTACGATGCAAACAGGGAATCTCAGCTGTTCTATGCACTCTTCTGTCCCGGAGCAGAAAGGGGAGCCGCCAGTGTTGCTGTCGCATGTTCATGTCATGGTACTGTTGGGTGCTTCCCCACTGTAAATTCACCCTGAACACAGAAGCATTGTCAAGACTGTGTTTatatcactctttttctctctctgtctctctctctttgtctctctctctctctgtctctctctctctctgtcctgtaACACGGCTCTTAATGCTGATTTTAGCAAAAGTATGTGCTACTCACAGCTAATAAAGAATTGGCACCAGACTGATGACTGAAACTCA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70500 lncRNA downstream 70711 15039318 ~ 15039561 (-) True G52271
TU70474 lncRNA downstream 185894 14923295 ~ 14924378 (-) True G52252
TU70471 lncRNA downstream 191420 14918403 ~ 14918852 (-) True G52250
TU70456 lncRNA downstream 289161 14820912 ~ 14821111 (-) True G52235
TU70454 lncRNA downstream 294522 14785411 ~ 14815750 (-) True G52233
TU70605 lncRNA upstream 278720 15406985 ~ 15432449 (-) True G52350
TU70621 lncRNA upstream 515581 15643846 ~ 15657440 (-) True G52366
TU70646 lncRNA upstream 697063 15825328 ~ 15825584 (-) True G52387
TU70648 lncRNA upstream 705310 15833575 ~ 15833849 (-) True G52389
TU70675 lncRNA upstream 783790 15912055 ~ 15916878 (-) True G52415
XM_022670267.1 mRNA downstream 336845 14560028 ~ 14773427 (-) False LOC103032692
XM_022670266.1 mRNA downstream 336846 14560028 ~ 14773426 (-) True LOC103032692
XM_022670265.1 mRNA downstream 585006 14506734 ~ 14525266 (-) True LOC107197797
XM_015607566.2 mRNA downstream 596778 14506734 ~ 14513494 (-) False LOC107197797
XM_015601720.2 mRNA downstream 722213 14355158 ~ 14388059 (-) True LOC103032914
XM_007256140.3 mRNA upstream 166735 15295000 ~ 15355710 (-) True LOC103031338
XM_022670273.1 mRNA upstream 791205 15919470 ~ 15973008 (-) True LOC103030471
XM_022670274.1 mRNA upstream 852368 15980633 ~ 16035096 (-) True LOC103030780
XM_022670281.1 mRNA upstream 957901 16086166 ~ 16129376 (-) False neurl4
XM_022670282.1 mRNA upstream 957901 16086166 ~ 16129376 (-) False neurl4
TU70552 other downstream 25704 15076296 ~ 15084568 (-) True G52299
TU70366 other downstream 698661 14408936 ~ 14411611 (-) True G52161
TU70092 other downstream 1446158 13663401 ~ 13664114 (-) True G51960
TU70078 other downstream 1519429 13565998 ~ 13590843 (-) True LOC111192615
TU69924 other downstream 1786589 13285303 ~ 13323683 (-) True smim24
TU70793 other upstream 1054470 16182735 ~ 16185312 (-) True G52493
TU70803 other upstream 1097971 16226236 ~ 16227174 (-) True G52503
XR_002650036.1 other upstream 1278454 16406719 ~ 16427613 (-) False zcchc4
TU70997 other upstream 1459885 16588150 ~ 16589783 (-) True G52652
TU70998 other upstream 1459885 16588150 ~ 16589783 (-) False G52652

Expression Profile