RNA id: XM_022670280.1


Basic Information

Item Value
RNA id XM_022670280.1
length 5398
RNA type mRNA
GC content 0.56
exon number 29
gene id neurl4
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16086166 ~ 16129376 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTACTGGGCCGCCCCAGCGCGATCATGGCGGCGGAGCTGCATCCGCGCAGCGGGAAGCTCATCGGTCTGTCCAACTCGAACCGGACCGCGCAGCGGAACCAGCCCGTGCAGGAGTTTAACCACGGCCTGGTGCTCAGCCGGGAGCCGCTGCGGGACCGGGACGTCTTCACAGTTCGGATTGACAAGAAGGTGAACTCGTGGAGTGGATCTATAGAAATCGGCGTGACCGCTCTAGACCCAGCTGCTCTGGACTTTCCCAGCAGTGCCACCGGACTAAAGGGCGGGTCCTGGATCGTGTCGGGCTGTTCGGTGCTGAAGGACGGGCGCTCGGTGCTGGAGGAGTACGGCCGTGACCTGGACCAGCTGGGGGAGGGGGACCGCGTGGGGATCCAGCGTAACGGACGCGGGGAGCTGCACCTGTGGGTGAACGGGCAGGACTGCGGCACCGCGGCCAGCGGCCTGCCCTCACGCCTGTGGGCGGTGGTGGACCTGTACGGGAAGTGCACTCAGATCACGGTGGTCAGTTGTGAGCCGCCGCCGAACACGGAGGGGGAGGAATGTGAGGAAGACAAGGAGGAGCGGGAGGAAGAGGCGGCGCCGGCGTCTCCGGGGGCTCTTATGACGGAGGCCTGCCGGGATCATGAGGAACGGACTGGAGCTCTGGCGCTGCCCACTGTTCCTGCTCTGGCTGCGGTGATGAACGGCTCAGCTGAGGAAGTGCCTGAAGTAACGGGGGGACATAGCCGACCGGACAAATTCCCCAACAACTTGGAGTCAGATACTGTCCTTACGGAGCACCAGTTGTTTGATGTGTTCAACAATGCCATTGTCTCGCTGTATCGTTCGGAAGGTGAGGGTGGAGAAGACTTGGGGATAAATGGAGTTGGAGGAAGTTCCGACTCCTCCAGAGGTGGGACTGGAAGTAGTAATGGAGCCAGAGGAACGGGAACGGGAAACGACAGTGGCATCGGAGGCGGTGCTGAAGGCGGGAGCAGCACAAACAACAGTCCGTCAGGAAGTTCAGGGGGCACAGCAGGGATACCAATGGGCAGCGGTGGCATGACCACCAACGACGCACTGCTGTTTCACGAGAAATGTGGAACATTGATTAAACtgagcaacaacaacaaaacagctGAGAGAAGGCGGCCGCTGGACGAGTTTAATAACGGAGTGGTCATGACCAACCGTCCACTGAGGCACAACGAGATGTTTGAGATCCGCATTGATAAACTGGTGGATAAATGGTCAGGATCCATTGAGATTGGAGTAACAACCCACAACCCTAATAATCTGGACTACCCAGCAACCATGACCAACTTACGCTCAGGTACAATCATGATGAGCGGCTGTGGGATTTTGACCAATGGAAAGGGGACGCGTAGGGAGTACTGTGAATTCAGTCTGGATGAGCTTCAGgaaGGGGATCATATAGGGCTGATGAGGAAAGCCAGCGGAGCATTGCACTTCTACATTAATGGCATAGATCAAGGTGTGGCTGCTAATCAGACCCCCGGGGTGGTATATGGGGTGGTGGATCTGTACGGAATGGCCGTTAAAGTGACCATCGTCCACAATCACAACCACAGTGACCGTTTACGTCGGAACAACGCCATCATGAGGGCGCTGTCGCCTGACGTCGGCCGGCCTCGCCCTGCCCTCTCGTTGACTCCCGACCCTGAAGCCCCGGACCGCTTGCTCTTCCATCCAAACTGCGGCCAGAAGGCAGCTATCATCGGTGACGGCAGGACTGCACTGAGACCTCACGCAACGGATGACTTTAATCATGGGGTGGTGCTGAGCAACCGTCCTCTTCATTCCAACGAAGTGTTCCAGGTGCGCATTGACAAAATGGTGGACAAGTGGGCGGGGTCTATCGAAATTGGAGTAACGACACACAATCCTGCCTACCTGCAGCTACCCTCCACCATGACCAACCTGCGCTCAGGGACGTGGATGATGACAGGCAATGGAGTCATGCACAACGGAACAACAATACTGGATGAATATGGACATAACTTGGACAGATTAAAAGCTGGAGATACCGTGGGCGTAGTGCGGAAGGATGACGGCAGCCTGCACTTCTTTGTGAATGGAGTTCCTCAGGGGCCTGCAGCCTGGAACGTGCCACCAAGTGTGTACGCTGTGGTGGATCTATATGGACAGGCGGCCCAAGCAACCATCATGGACGATATGgCTGATCTCCCTCCTCTCCCAGACGATAGTTCTGAAGGGCCGATGGCCATGTCCCCGGGCAGCCCCTGTTCAGTCACCGGGGCCAGTGCAGCCAGTGACCTGCGCTTCCATCAGCTGCACGGCACTAACGCGGTCATCACTAACGGCGGCCGTACCGCACTCCGGCAGAACTGCCGCAGTGAGTTCAACGATGCCATCGTGATCTCCAACAGGTGCCTTCGTGATGGAGAGTTATTTGAGATTGTAATTCAGAAGATGGTGGACCGCTGGTCCGGCTCCATAGAGGCGGGAGTGACTGCAATCAGACCTGAGGAGCTGGAGTTCCCCAACACCATGACTGACATCGACTACGACACCTGGATGCTGAGTGGCACGGCAATCATGCAGGACGGGAACACCATGCGGAACAACTACGGCTGTGATCTGGACTCCCTCAGCACCGGCTCCAGGATCGGCATGATGAGGACGGCCTCTGGAGATCTGCACTACTACATAAACGGAGTGGATCAGGGAGTGGCTTGTACTGGACTGCCACCAGaGGTGTATGCAGTGATTGATTTGTATGGCCAGTGCGTGCAGGTGTCCATTACTAGCTCATCCGGCCCTCTGGACAATAGCCTGTGTACCAGTAATATCACAGAAAAGAGTTTTCCCATACACTCGCCAGTGGCAGGTGTTGCTCATCGCCTGCACAGCAAACATGGGAAGAATGTGGTGTTACTGGGAGATGGTTGTCAGGCAGTCAGGGTGGGAGGTTACGCTCACGGAATCGTCTTCAGTGCGAAGGAGCTCAAGACTGATGAACTGTTCGAGGTGAAGATCAATGAGGTGGATGAGCAGTGGTCTGGCTCGCTGCGCATCGGCCTGACGACCCTGCAGCCCCCTGACCTGCCCTCCTGTCCCCTCAGCGGCCTCTCGCCCTCCCTCACTCAGCTCAGGTCCAAGGTCACCTGGCTGCTTGCTGGTTCTGAGGTCAGGCGGAACGGCGTGCTGCAGAGACAGAACTACAGCTGCTCACTGGACCGACTGACGGTGGGGAATCGTGTGGGCGTGAAGAGATGCAGTGATGACACCATGCACATCTTCATTGACGGAGAGGATATGGGGCCAGCAGCTACTGCTGTGGCTAAGAATGTGTATGCAGTGCTGGATCTGTATGGGAAGGTGACCGCCCTGTCCATCGTCAGCTCTACGGTAGTGGAAGACGTGGAGAGCGTGAAGGCTCCGTCGCTCTCCTCCGACAGCTGCAGTGAGGGAGAGGAGGACACCACGCCGTGTGAGAACGAGCCCGCCCTGCTGCCCATGTCCATGACCTTTCTGGAGAATCATGGGAAGAATATCCAGCTGTCCAATCAGAACCTTACTGCAGCTCGAGTGTCCAGCTATAACCAAGGCCTGCTGGTCACAGCACAAGCTCTTCCCCGCCAGCAGCTTTTCCAGTTTCAGATAGACAGGCTGAACTCATCCTGGACGTCGTCTTTGTCTCTGGGTGTAATCGGTCACTCACCTGATCGCCTCAACTTCCCCTCCACGGCCTGCTGCCTTAAACGCTCCGTCTGGCTGCTGCAGCGAGACTCCGTCTTCCACAACTCGCTCAAGATCTGTGAGAACTATGGGCCTAACCTGGACACGTGTCCTGAAGGGACAGTGCTTGGGGTTCTGGTGGACGCTAATGGCTGTCTCCACTTGTACGTGAATGGGATGGATCAGGGAGTGGCAGCCCAGGACATTCCAAGCCCCTGCTTCCCTCTCATAGACCTTTACGGACAGTGTGAGCAGGTTACAATAGTGACCAATCACGTACCGGCAGTGGGAGCGGAGAGCAGTGATGCTCGGTGCCAGGGAGATATGGAGAAGGCTGACATGGTGGACGGTATAAAGGAAAGTGTATGCTGGACTCCTCCTCCTGAAGTCAACCCCAATAAAACCTGCGAGTACCAAGCGCTCTGCTCTCGGTTCAAGGAGCTGCTCACACTCCCTGaTGGTTACTTTAATGAGGATGCCAAGTATAACCTCTGCTACTGTGAGTCCTGTCATAAGCTCCGTGGTGACGAGGCGTACTACAAGCGCGGCGAGCCACCCAGGGACTATGCTCTGCCGTTCGGCTGGTGCCGCTTTGCCCTGCGGATCAAGCCACACTGTGAGGTATCAAATACCTTTAAGAAGTGGCACATTGCATATCATGGCACAAGTGTGGGCTCTCTTCGCCGTGCGCTGGACCACAGCCAGATCCTAACAGCAGAGTCGTCCTCAGTGTTCTCGGCACCACCGGTGAAGGTGGAGGGTCATGGCAGCTATGGAGAACCAGAAGAGAACAGCGCACCAGAGCGAGAAATCCCCCGCGTTCGCCTCTCGCCCACAATGCGCTACTCTGGTCTGGAGGTCTTTGCCCCTAAAGTGCAATTTCGAGACCCTCGCTCTCTGCGCTGTCACAACGCCCAGGTGGGCTTCCAGGTGTGCGTGCGCCCGGGCTCCTACAAGGTGGGCCCTCAGTCGCTGGGCGTCAGCGAGCCGCTGGATCCCAGATTCAGCAACACTGAGATCGAGTGGATCACCAAGGAGAAGGGCGGCACCCTGCTGTACGGCCTGCTGATCCGTGTGGagtgagcagagagagagagagagagagagagagagagagagagagcacctcCTCCACTTTCCACCTTCTTCCccagtatgaattattattcTGCATATCACCTCCCACTCACTGTTCAGCCTCGGGCTGTAGCTCCTCCTCCCTTCCCTCTTCAGAGCGCGTTCAGAGAGTTCATACCGGAGGATGGCGTGACCTTCTCCTGCGGTCTGGAGCTTCACTCCTCTCTCAAGGCTTTTATTTCTCGTATTTTACTTGAGGTTGTTGAGATCGATTTGAGTTAGTCTGTGTTCACACAGCGGGTGAAAGTGGTCCAAATCCAAATTTCTTACCAATtctgatgtttattttagtctGTTCACACTATATATTTTCTGAACCTACTAACTGAAACCTTTACTCactgctgttgtccattttcACATCTACTTACGTCCATTTTTCCTCTGCTTGACGTAATCTAGGGGTGGGGACGATACAATATCACGATACATTGCCCATGATGCGGTACTCTGTGATACtcgatgtacagctctggaaaaaataaagagagcacttcagtttctgaatcagtttctctgattttgctgtttataggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70762 lncRNA downstream 3274 16081235 ~ 16082892 (-) False G52474
TU70764 lncRNA downstream 3274 16081235 ~ 16082892 (-) True G52474
TU70756 lncRNA downstream 106435 15979473 ~ 15979731 (-) True G52470
TU70679 lncRNA downstream 157546 15924236 ~ 15928620 (-) True G52418
TU70674 lncRNA downstream 169288 15913929 ~ 15916878 (-) False G52415
TU70776 lncRNA upstream 32264 16161640 ~ 16215425 (-) False LOC103028883
TU70792 lncRNA upstream 50143 16179519 ~ 16180002 (-) True G52492
TU70794 lncRNA upstream 58875 16188251 ~ 16190647 (-) True G52494
TU70796 lncRNA upstream 70833 16200209 ~ 16200712 (-) True G52496
TU70781 lncRNA upstream 86793 16216169 ~ 16219847 (-) False LOC103028883
XM_022670274.1 mRNA downstream 51070 15980633 ~ 16035096 (-) True LOC103030780
XM_022670273.1 mRNA downstream 113158 15919470 ~ 15973008 (-) True LOC103030471
XM_007256140.3 mRNA downstream 730456 15295000 ~ 15355710 (-) True LOC103031338
XM_022670269.1 mRNA downstream 957901 15110272 ~ 15128265 (-) True LOC103046390
XM_022670266.1 mRNA downstream 1312740 14560028 ~ 14773426 (-) True LOC103032692
XM_022670285.1 mRNA upstream 11294 16140670 ~ 16159716 (-) False shbg
XM_022670284.1 mRNA upstream 11294 16140670 ~ 16159709 (-) True shbg
XM_022670286.1 mRNA upstream 12316 16141692 ~ 16159709 (-) False shbg
XM_007230746.3 mRNA upstream 34189 16163565 ~ 16191033 (-) True LOC103028883
XM_022670951.1 mRNA upstream 221563 16350939 ~ 16356960 (-) True LOC111192725
TU70552 other downstream 1001598 15076296 ~ 15084568 (-) True G52299
TU70366 other downstream 1674555 14408936 ~ 14411611 (-) True G52161
TU70092 other downstream 2422052 13663401 ~ 13664114 (-) True G51960
TU70078 other downstream 2495323 13565998 ~ 13590843 (-) True LOC111192615
TU69924 other downstream 2762483 13285303 ~ 13323683 (-) True smim24
TU70793 other upstream 53359 16182735 ~ 16185312 (-) True G52493
TU70803 other upstream 96860 16226236 ~ 16227174 (-) True G52503
XR_002650036.1 other upstream 277343 16406719 ~ 16427613 (-) False zcchc4
TU70997 other upstream 458774 16588150 ~ 16589783 (-) True G52652
TU70998 other upstream 458774 16588150 ~ 16589783 (-) False G52652

Expression Profile