RNA id: XM_022670290.1


Basic Information

Item Value
RNA id XM_022670290.1
length 2387
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC103032046
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16363613 ~ 16374341 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGCCATCTTTGGCGGGAGGTCGGGAGCCGGAGCGGCGCAGCTGCAGATACGAGGTTTTATAGCGATATATCAGAGCAACAGCGGGTACTACCAGAGCCCTGTCTACTATGTAGAGCTTCTATATGGAGGAAGATATCGTCATGCCATCCAGTTGTTGCGTCATTAACTGCTCCTCCCAGAAGCCCTGCAGAAACCCTGACCAGACTCTCTCCTTCCACAGATTTCCTAAGGATGCTGAGCGAAGGCTGGAGTGGTGTAATGCAGTGCAGATGCAGACGGCAGCTCTGGAGCCGTTCACTCTGTCCTGTAACAGCGTGCTGTGCAGTAAACACTTCACCGAGGACATGTTCGACCGCACTGGCCAGACTGTCCGTCTGAGAGACACTGCCGTACCCTCTGTCTTTAATTTACAAATCACTAAGAAAGTAAAAGATGAAGCTACAAAAGAGATGATTCCACACAAAAGGAGAAACAGTGCACATCtgctgagaagaagaagaaagaagaattGGGAAGGAAGCAATAAAGAGAGAATACAAAGCACAGCCTCAGGTCTGGGAGAGTTGGCTCTGGCGGCTGAGCTGATGGAGGAGAGCCAGCAGGAGATTCAGAAAGGATTCCAGAACGACCACGGTGGCCTTCCCCTCCCGTCCGACCCGGCGAGACTGAGCGGTCTGGTGCGAAACCTGGCGAAAGAGAGACACTGGCAGGGGGAGACGCTGCTCTCGCTCCGCAAAGAGCTCAAAACCAAGGACGCTCAGCTGCAGGAGAAGAAGCTGCAGTTGGAGAGGATGGTGGAGAGTCAGAGAGATGCTGATAAGTATAAAATCTGCTCTCTGGAGAACATGTTATGTAAGCAGCGCCTGGAGACGCTGAAAGTACAGGAGGAACTGTCCCAAACCAGGAAGCAGCTGAAGGAACGTACAGAGGCCCTGCACTGCCTGGCTGCTGTCAGACAGgtcacTCCATCCTCTCGTGCGAGCATGTTCACTGTGAAGGCCCTGTGCCGTGGTTCGGTGAAGTGGCTCCATTTCTACACTGGTTTTAAATCGTACGCTCGTTTCCGGGCTCTGCTGGCCTTCCTGCAGGGCTCCGATGGATCCGTCCTGCACTGGAATGatcgggaggaggaggaggaaaagagcAGGGAGGATGAAGGGATGAGTGAGAAGATGGAGAAGAATCCAAGTTCAGACCAAACTTCAACGGAAGAGTCGAGGCTTCAGGTATCAGAGGATGatgctacagcagcagcaggacctGATTCTGGAGGCTGGAGGTGGGAGGAGACAGCGGAGACGGTGAGGCTGAGGCTGATTGGTTCTCAGCGGGGTGAGGAGAGCAGACGCTACGCCCTCAGCCCGGAGGAccagctgctgctggtgctgacccGCCTCCGCCTGGGCCTCCTCACCTCAGACCTGTCCTTCCGCTTCCAAATAGCAGAGGCCACCGTCTCCCGCATGTGGGTGCAGTGGGTGGAGCTCCTGCGGAAGAAGCTGCAGCAGatcccGGTGCGCTGCAGTCCTCATTACGTCTCCGTATTTCAGCCTAAACACACTCTGTCCTGTGTTTCGGGTCGTCAGCTGACCATCCTGCACTGCGTGGACCTCTTCTGTAGCTCCTCAAAACGGGACCGGCAGCAGGCGGCCAGAAGACTACGCCCCTCCTCAGACGGGCAGCACCTATCAGCTCTGCCGTATCGATTTCCCTGCCCGGTCCGTGTCTGCGCCGTGGCCTCGCCGGAGGGCTACCTGGGCTTCTGCAGCTCCGCCCGCCTGGACGAGTGGCAGGAGTGGACAGCCAATCAGGATAACCCAAAGCCTTTAACCTTACCTGCGTTTGTAATGAATGGGGAGGGGGCGGAGCCTCTCGCTGGTATGCCAGTAAGGGAAGTGCTGAGTATTAAGAGTCTGACGGACAAAGTGATGAAATATCATTATCTGAGGACGGTTCATGCACACGGGTCAGAGGCTCTGCTGGACCAGGCCTGGGAGGTGTGCTGCTACCTGGCCTGCCTACTGTATCAGCCAATGGGGCTGCGCTAACTGCAGGTCACTGGCCAATAGGGCTCCAAGATACTGGAAAAATAATTTTTGGCTCTGCAACGTATATTGCTGTTAGTGTTGTTGTCAAGACCACTAGACCTgattcaagaccaagacttgtAGGTatttgagtccaagtcaagaccaaaagTTTTGGTAGTTAAATCTGAGTCCAAGACCAAGACTTCTAGTtgttgagtccaagtcaagaccaagacttttggTAGTTGAATCCAAGTGAAGACCAAGACTTTTGGTTGTTgaatccaagtcaagaccaagacttttggTTGTTgaatccaagtcaagaccaagacttttggTTGTTGAGACCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70869 lncRNA downstream 9648 16343756 ~ 16353965 (-) False LOC111192725
TU70851 lncRNA downstream 23646 16292416 ~ 16339967 (-) True G52538
TU70860 lncRNA downstream 63912 16296010 ~ 16299701 (-) True G52547
TU70853 lncRNA downstream 70541 16285052 ~ 16293072 (-) True G52540
TU70856 lncRNA downstream 74068 16261118 ~ 16289545 (-) True G52543
TU70877 lncRNA upstream 806 16375147 ~ 16376685 (-) True G52559
TU70879 lncRNA upstream 2658 16376999 ~ 16378858 (-) True G52560
TU70885 lncRNA upstream 23857 16398198 ~ 16402965 (-) True G52565
TU71001 lncRNA upstream 220830 16595171 ~ 16626105 (-) False G52654
TU71005 lncRNA upstream 248408 16622749 ~ 16677399 (-) True G52655
XM_022670951.1 mRNA downstream 6653 16350939 ~ 16356960 (-) True LOC111192725
XM_007230746.3 mRNA downstream 172580 16163565 ~ 16191033 (-) True LOC103028883
XM_022670285.1 mRNA downstream 203897 16140670 ~ 16159716 (-) False shbg
XM_022670284.1 mRNA downstream 203904 16140670 ~ 16159709 (-) True shbg
XM_022670286.1 mRNA downstream 203904 16141692 ~ 16159709 (-) False shbg
XM_022670292.1 mRNA upstream 32378 16406719 ~ 16427613 (-) True zcchc4
XM_022670300.1 mRNA upstream 447906 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA upstream 447906 16822247 ~ 16928239 (-) True LOC103024300
XM_022670297.1 mRNA upstream 815474 17189815 ~ 17464293 (-) False LOC103037795
XM_022670298.1 mRNA upstream 815474 17189815 ~ 17464293 (-) True LOC103037795
TU70803 other downstream 136439 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 178301 16182735 ~ 16185312 (-) True G52493
TU70552 other downstream 1279045 15076296 ~ 15084568 (-) True G52299
TU70366 other downstream 1952002 14408936 ~ 14411611 (-) True G52161
TU70092 other downstream 2699499 13663401 ~ 13664114 (-) True G51960
XR_002650036.1 other upstream 32378 16406719 ~ 16427613 (-) False zcchc4
TU70997 other upstream 213809 16588150 ~ 16589783 (-) True G52652
TU70998 other upstream 213809 16588150 ~ 16589783 (-) False G52652
TU71687 other upstream 2212060 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 3475609 19849950 ~ 19850350 (-) True G53382

Expression Profile