RNA id: XM_022670292.1


Basic Information

Item Value
RNA id XM_022670292.1
length 3349
RNA type mRNA
GC content 0.41
exon number 13
gene id zcchc4
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16406719 ~ 16427613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTAGAGCGCGTGTAATGTTTGCGCGACAAACCAGCACAGCATGGCCCAGATTATACTGGGTTTATTCTGAGTTTTTACTGCGTTTAGACTGGATTTATACTGGGTTTAGAAGGAGATTCTGGATCAGAATTaaccccagcagcagcagagctggaTAATGGTGAACACGGAGGATTTAGGAGATATCGAAGCTGTTATTCAAGATGAAGAGGATATAAAAGCTCCACAGTGTCCGCACGGACCTGCTGTGCTGTTTGAGGTGCAGTGTGAAGGAGAGAAGAAGGGAAGGAGGTTTTACGCTTGTTCTGCATGTCGTGATCGAAAGGACTGCAACTTTTTTCAGTGGGAGAATGAAAAGGTATCGGAGGCAAGGCTGCTAGCGAGAGAACAACAGAACCGATCAAAGTTGCCTCCCTTCACTCATGAACAATACTGCACAAGGTTCAGAGAGTTTGCGAGTCTCCCGCTGGATCAAAAGAGGTTTTGTGTGGAATGTCAGATCCTGCTGCTTCCTGTGGAGTGGGAGGGTCACGCCTCTCACCGGGTCCTCTCAGACATCACCGTGTCTCAGCTGAGGAGACCCAGTCTGCTGCTGAGTCCTCTGGAGAATAAGAAGAGTAATGCTCAGTACCTGTTCGCTGAGCGCAGCTGCCGCTTCCTGCTGAAGGTGCTGTCTGGACTGGGCTTCCGGAAGTTTCTGTGTGTGGGGACGCCGCGATTACATGAACTGATCAAGGTGCAAAGCTCAGAGAACAAGAGTAGTGACCCCATGAAGAGTTTACTGTTGGACATCGACTTCagATATTCTCAGTTTTATGGGCAGGACGAATTCTGTCATTATAACATGTTTAACCATCACTTCTTTAATGGAGAGgAAGCATCCAGAGTGTTCctggacttcctgactgaggACAGATCTAAAGTGGTGATGGTGGCGGATCCACCGTTCGGGGGGCTGGTGAAGCTGCTGGGTCACACCTTCTCAAAGATATCAGAAACATGGAGAAAGCAGCAGGAACCAGGGCTGGGCGTGTCTGAGATGCCGATGGTGTGGATTTTTCCGTACTTCTTTGAGCTGCGGATTCTCGAATGTTTCCCTTCTTTTGCTATGCTGGATTATCagGTAGATTATGACAACCACCCTTTGTATAAGCATGGGAAGTCTGGCAGGAAACAATCACCTGTCCGACTCTTCACAAACCTCTGTCCCAAAGACATTGTTCTACCAAAGGAGGAAGGCTACAGATTTTGCGCTATTTGTGAGAGATACGTTTCAGCAGAGAATAAACACTGCTCTGTGTGTAACGCCTGCACATCAAAGAATGGAACAGAATGGAAGCATTGTTCACAATGTGACAAATGTGTGAAGTCCTCCTGGAGCCATTGTTCTTCGTGTGGTTATTGTGTTCTGCCGAATCACCAGTGTGGGCAGACGGGCTGTTTCAACTGTGGCGACCGTGGGCACAAGCTCAGAGCCTGTCCAAAGAAAGGCAAGAAAAActtacagcagcagcagcagaagaagaaaaagaagaagagtaaGAGTGGTAAAGCAGCTCCAGGAACGTTAAACAAGAGCGGCAACAAAACCACAGGCAAACACAAGAGAGGCAAACACTCACGCGGGAAGAAGTAACCGGTCACGTGATTCCTCTCTCACGCAGCGCTGCAGAGGTGTGACACTGTGCTGGTGAGGGTGAGGCTGAAACTCGAGTCATTTATCCTGGATCTGCTGGAGTTCTGCAGCTTTAGCAGGACTGAAACATCAAACTTCTGTAGTGAAGTTCCAGTAAAGTATTGAGAAAACTGACTGGTTATGTTGAATTATTGAAATTCTCTGTAAAAAACATTTCGGAAACACTTTGTATAAATCTCATGTCTATTAGAAtctataaacacaaacaaacatattcataatacattataatgcttttataaggcattatagatatagctatacatatttataaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatatgCATGTTTATTATGCTGTGTGAATTGAGActataatgcatcataagctATGCTTGTAATAGGTTACAGATAtggcttaaaatatatatttccatgagggtgccgagtggtccagcaggctaatgTCTGCCACATGCACATGCAGCAagtcatcagctgccggagccccgagagagcacagttggccttgctctgtgTTCATAAGTAGGCTTTGTTGAGGTTCTTGGTATTAACATATCAtcttataagcacagcttatgatGCATTAGAATTACAATTCATAGTTGTAGAATAATACacatggctatatatatatatatttttctaaaagtgtataacacattatagcaatATTTATTATGCCTTACGCATACATCACAATGAgttataagtatgtttatagagacatttataaacatgaCTAATAGAAGGTGTTACtgccatttttaaaaacataactgATTTTgttcattcttttgttttttgtgttttaagtgcagaaataaaaatctgatCAACTGATTTATGTGATTTGTTGAATCATCTGTATTAAAGCAGTTGAGCATGAGTGTGTTTAACAGCACAGCTTTAAAGTTATTTACAAAAACACATCATCTCAAGTGTTACAGAAATGacaaacatttatgtttttaaaattaaaccattaaataaaaaaattaaaccagcattaaacatttcttaatcaatttttttgttgttaaaagtaaaaagttaacACTTCATTATGGGTTCATTTACACATACCTTGTATTGTTCTCAAACaatccaggaaaacactgcatctTAAAGTAATGAAGCATCACACacctgaaagaattctgcatggaggaatgGGAAACACTTTCTCCCAGCCTAAATATCTTaagaactggtgttgtgctgaaatccatCTTCCCTTGCTGTGTATTTGCGTCACgcagcagtacgggtacaacagattacggtgctggtgattctgtatctactgtaactgtagattaattacagagca

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70885 lncRNA downstream 3754 16398198 ~ 16402965 (-) True G52565
TU70879 lncRNA downstream 27861 16376999 ~ 16378858 (-) True G52560
TU70877 lncRNA downstream 30034 16375147 ~ 16376685 (-) True G52559
TU70869 lncRNA downstream 52754 16343756 ~ 16353965 (-) False LOC111192725
TU70851 lncRNA downstream 66752 16292416 ~ 16339967 (-) True G52538
TU71001 lncRNA upstream 167558 16595171 ~ 16626105 (-) False G52654
TU71005 lncRNA upstream 195136 16622749 ~ 16677399 (-) True G52655
TU71003 lncRNA upstream 196370 16623983 ~ 16646294 (-) True G52654
TU71004 lncRNA upstream 196370 16623983 ~ 16651572 (-) False G52654
TU71015 lncRNA upstream 250474 16678087 ~ 16765190 (-) True G52662
XM_022670290.1 mRNA downstream 32378 16363613 ~ 16374341 (-) True LOC103032046
XM_022670951.1 mRNA downstream 49759 16350939 ~ 16356960 (-) True LOC111192725
XM_007230746.3 mRNA downstream 215686 16163565 ~ 16191033 (-) True LOC103028883
XM_022670285.1 mRNA downstream 247003 16140670 ~ 16159716 (-) False shbg
XM_022670300.1 mRNA upstream 394634 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA upstream 394634 16822247 ~ 16928239 (-) True LOC103024300
XM_022670297.1 mRNA upstream 762202 17189815 ~ 17464293 (-) False LOC103037795
XM_022670298.1 mRNA upstream 762202 17189815 ~ 17464293 (-) True LOC103037795
XM_022670301.1 mRNA upstream 1040438 17468051 ~ 17476591 (-) True LOC111192622
TU70803 other downstream 179545 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 221407 16182735 ~ 16185312 (-) True G52493
TU70552 other downstream 1322151 15076296 ~ 15084568 (-) True G52299
TU70366 other downstream 1995108 14408936 ~ 14411611 (-) True G52161
TU70092 other downstream 2742605 13663401 ~ 13664114 (-) True G51960
TU70997 other upstream 160537 16588150 ~ 16589783 (-) True G52652
TU70998 other upstream 160537 16588150 ~ 16589783 (-) False G52652
TU71687 other upstream 2158788 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 3422337 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 3874922 20302535 ~ 20302628 (-) True trnai-uau_7

Expression Profile