RNA id: XM_022670297.1


Basic Information

Item Value
RNA id XM_022670297.1
length 2278
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC103037795
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17189815 ~ 17464293 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agcagcgctgtgGTTGTGGAAGCAGCGTAAGTTCTGCGCAGTGTGAGTGAGCGTGCTGAAATAAACACTggagttttttagtttttaagtgtttttaaagggAATTCGTGGGATTTGGAGGATTTTAGCAGCTGAAACTCGGCCGTGGTGGATTAATTTAGCTAAAGAAGTGGACGGAGAGACTTGAGTTGAGCCGGCGTTTTCCTATTACTATTCACAGTGTGTCCATGGCATAACCTCGGCTTTACAACTTCCTCCTGAGGGAGTGGCCACCCAACCCCACCCATCACGTCATCGCTGGATTGCTGCAGTATCACCGTGGCAGCTGTGTGATATCTACAGGAAGATCTAATCATGCCGGCTCTGTCTGGAACAGGCCCTGAGACAGGTCTGTACGAGTTGCTGTCAGCGTTGCCGGTTCAGCTGCAGGCTCATGTGGACAGCGCAGATGATCGCTCCTTTCTGCACACCATGTTCGGAGAGAGGAGCCTCCACTCACTCGTTAAGgtccaTGAGAAGTTACAGCATTATGAGGAGAGCTGTCCCGCTCCAGTTCTGGACACTGCCGGTGCTCTCGCTCAGGGTgtgttGGAAGAGCTGCAGGGTAAGGTGTTGAGTGTGGAGGTCAGAgagctgctgaagctgctgtccAAACCACACATAAAGagTTTGCTGTCAGTTCATGATACAGTGGCTCAGAAGAGTTACGAGCCTGAGCTTCCTCCTCTGCCAGACGACATCGACGATGATGAAGATTCAGTGAAAATCATCAGACTCGTCAAGAATAAAGAGCCTCTGgGGGCCACCATCAAAAGGGATGAGCGTACGGGTGCCATCTTCATCGCCCGCATCATGAGAGGAGGAGCAGCCGACAGAAGTGGTCTGATCCATGTAGGAGATGAGCTGAAAGAGGTCAATGGCATCCCTGTGGACGACAAGAGACCTGAAGACATAATTCGCATtctgGCTCAGTCTCAGGGTGCAATCACATTTAAAGTGGTGCCAGGAATACTGGATGAAGGCCCAGCCAAAGAACCCAAGGTGTACCTCAGGGCTCTGTTTGACTATAACCCGGAGGAGGACACGGCCATCCCCTGTAAGGAGGCGGGGCTAGCCTTCAGGAGAGGAGATGTGCTGCAGGTGGTGAGTCAGGATGACGCCACCTGGTGGCAGGCCAAACACGAAGGAGGCGCCGACCACCGCGCCGGCCTCATACCATCCAAACACTTCCAGGAGAGGAGACTTGCACATCGTCGACCCCTGACAAACACTCTTCCTCAGAAAATCACCAGAAAACCATCCAGTTTCCGGCGGAGTTTCCGTCTCAGCAAAAGAAATAAGAAGACCAATAAATCCATGTATGAGTGTAAGAAGAGTGAACAGTACGACACGGCTGATCTCCCAACTTACGAAGAAGTTGCTCATTACCGTAAAGGACATGGAGCCAAACATAGACTCGTCGTTCTGGTTGgtccTACAGGAGTGGGTTTGAATGAGCTGAAGAGGAAGTTGTTAATATCTGACCCGCAGCACTTCAGTGTCACCATCCCCCATACGTCTCGAGGGAAGAGGAGTCAGGAGAGTGATGGGGTGGAGTATCACTTCATCTCTAAACACCTGTTTGAGACAGATATTCACAACACTAAGTTTATTGAGCACGGTGAGTATAAGGGGAATTACTACGGGACCAGTGTGGACTCGGTCCGGTCAGTTCTAGCCAAAAACAAGGTGTGCCTTCTGGATGTTCAGCCCCATACGCTGAAGAATCTTCGTACGGCTGAGTTTAAGCCCTTCGTGGTGTTCGTGAAGCCGCCGTCCATCGAGCGTCTGAGAGAGACCAGGAAGAACGCTAAAATAATATCAGGGAAAGATGATAAAGGCTCGGCTAAGCCCTTCACGGAGGAAGACTTCCTGGAGATGATCAATGCAGCCCAACTGATGGAGAACCAGTACGGCCACCTCTTCGAAAAGGTCATCGTTAACGACGACTTAACGACGGCTTTCAGCGAGCTGAAGACGGCCCTGAGGAAGGTGGAGACAGAGACTCACTGGGTTCCTATCAGCTGGACACACTCATGAAGGACAGCACACACACTTGGAAACACATAAGGGAGAGGAatttaacaaaagaaacaaaatgagacaaaagggaaaaacactcgggtaacactttatttgatgGCTACTACATAAAGGCTTcataatacaggggttggaaaatgaaactgaaacacctggttttagagcacaataattgattgtggtgacggacagttct

Function

GO:

id name namespace
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71135 lncRNA downstream 31910 17157505 ~ 17157905 (-) True G52759
TU71092 lncRNA downstream 87349 17102233 ~ 17102466 (-) True G52729
TU71091 lncRNA downstream 91346 17098123 ~ 17098469 (-) True G52728
TU71084 lncRNA downstream 111861 17030713 ~ 17077954 (-) True G52722
TU71087 lncRNA downstream 115715 17070405 ~ 17074100 (-) True G52724
TU71257 lncRNA upstream 129323 17593616 ~ 17645708 (-) True G52850
TU71259 lncRNA upstream 178624 17642917 ~ 17645708 (-) False G52850
TU71305 lncRNA upstream 311589 17775882 ~ 17791944 (-) True G52891
TU71390 lncRNA upstream 414514 17878807 ~ 17879433 (-) True G52946
TU71395 lncRNA upstream 445195 17909488 ~ 17910071 (-) True G52947
XM_022670300.1 mRNA downstream 261576 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA downstream 261576 16822247 ~ 16928239 (-) True LOC103024300
XM_022670292.1 mRNA downstream 762202 16406719 ~ 16427613 (-) True zcchc4
XM_022670290.1 mRNA downstream 815474 16363613 ~ 16374341 (-) True LOC103032046
XM_022670951.1 mRNA downstream 832855 16350939 ~ 16356960 (-) True LOC111192725
XM_022670301.1 mRNA upstream 3758 17468051 ~ 17476591 (-) True LOC111192622
XM_022670308.1 mRNA upstream 184158 17648451 ~ 17665261 (-) True LOC103035515
XM_007241903.2 mRNA upstream 204371 17668664 ~ 17669725 (-) True LOC103035822
XM_007259717.2 mRNA upstream 1117587 18581880 ~ 18610419 (-) True grem2
XM_007259720.3 mRNA upstream 1180162 18644455 ~ 18648875 (-) False nat9
TU70997 other downstream 600032 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 600032 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 762202 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 962641 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 1004503 16182735 ~ 16185312 (-) True G52493
TU71687 other upstream 1122108 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 2385657 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 2838242 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 3217518 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 3319445 20783738 ~ 20787618 (-) True G53598

Expression Profile