RNA id: XM_022670299.1


Basic Information

Item Value
RNA id XM_022670299.1
length 1809
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC103024300
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16822247 ~ 16928239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCCCCTGAATCTGTATATCTGATCCTCAGTATGTTAGCTGCGCGCGCCACCGCTCTGGGAAACACGAGCCTCGCGGCGCGTGCAGGTTCCCGGGTGCGCGGAGGATAAATCGCGGGGGCGCGCGCGCACCGGCTACTCTTCTTGCAGCGCGCGGAGCTTGTGCTGCTGGTGCCGGGATTGTGTTCTGCTGGTGCTGTAAGTGGAGCTGGAGCGCGCGAGGGAGAGCGTGTGAGAGGGGTATGGGAGAGCGGACGCAGCAGTGCACAGGACAGGCAGCGGAACAGGACTCTGCGCAACGGCGCCATCCAGCAGCACCTTGAGCGCGCGCACGGGACTTTAAGGCAGCAGGGAGACACGGCGTGGGACAGCACGCGGGACAGTGGGCTCAGCGGGAcgcagcaggactaaaagcagccaaaaaaaaatgaacgcGATCGTGTTCAACAAGCTGAGCAGCCAGGTCCTGTTCGAGGACAAGGCCAGCGAGGTGGAGCGGAGCAGCAGGAACTATCTGGAGGTTCTGGACGGGCAGCACGCGGACATCCTGACCAGCAGCCAGGGCATAAAGGACAGCTCAGCTATAAGACACAGGAGACCTGGgtcTCGGCAGGGTGTTGGTAAGGTACGTCACAAGCGGCAGGCGCTGCAGGATATGGCACGACCCCTGAAACAGTGGCTTTATAAACACCGGGACAATCCGTACCCCACCAAAACCGAGAAGATCCTCCTCGCTCTCGGATCCCAGATGACCCTGGTGCaggtgtcGAACTGGTTTGCGAATGCTCGGCGGCGGTTGAAGAACACGGTTCGGCAGCCGGATCTCAGCTGGGCTCTCAGGATTAAACTCTATAATAAATACGTTCAGGGAAACGCAGAGAGACTCAGCATCAGCAGCGACGACTCCTGCTCAGacgATGGTGACCCGGGTGCTCGGACCCAGCCGGGGGAGTTCAGTAAGCCCATGTATCAGAGTGTCATCAAAAAAGAAGGTGGCGGCATGGGGGCGGGGCTTCGGGCATCCGCAGACCCCTCATTGGCCGAGGACTACGTGTCTCCGCCCAAATACAAGAGCAGCTTGCTCCACCGCTACCTGAACGACTCGCTGCGTCACGTGATGGTGACCAACGCGGTGATGGACGCCCGGAGGAGGAACCACTCGGGCTCCTTCAGCTCCAACGAATACGATGAAGACCTCTTATCTCCATCGTCCTCAGAAACAGAGGCCAACTTCGTCTATCGAGCAGAGTCTCTGGACCATGGATCAAGTAAATGTGACAACAGCATCGTCCCGAAGGAGAAAGGACGCGGTAAAGACGAGACGTACTGGCGAGAGATCAACGCAGCCATGGCCCTCACCAACCTGGCCCAGCCCAAAGACGGCGCCCCCTCTGGAACCACCAGCTGCATCATCCAGAAATCCTCCCACATAGCTGAAATCAAGACTGTCAAAGTGCCCATCCTGCACAAGTACTAGCGCCCTCTTCCTGCGGACAAGGAGACACGCCTCTTCTCGTCCGTCtggagttttaattttttaattttttaatattttgtggtACTTATGAAGTAGCaatataaaacagttttttttatatttgaagaGACGTTACAGTGCCCTGAAACGCAGCACTTCTCACGGTTTCTGGGTTTGTGCCTGTTCTGGACGCACAAGCCCTTTAAATAAGTGCTGACGAGCGACGAAGACGACGACAGTATTGCAGAACGAGACACTTTTGCAATGTTAAGTTATTTTGATACAATTTCTTTTTGTACtctttttgaagttttttttattgtatcgtGCCAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24890 MKX; homeobox protein Mohawk

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71015 lncRNA downstream 57057 16678087 ~ 16765190 (-) True G52662
TU71032 lncRNA downstream 61822 16759218 ~ 16760425 (-) True G52676
TU71029 lncRNA downstream 68664 16752501 ~ 16753583 (-) True G52673
TU71005 lncRNA downstream 144848 16622749 ~ 16677399 (-) True G52655
TU71004 lncRNA downstream 170675 16623983 ~ 16651572 (-) False G52654
TU71084 lncRNA upstream 102474 17030713 ~ 17077954 (-) True G52722
TU71087 lncRNA upstream 142166 17070405 ~ 17074100 (-) True G52724
TU71091 lncRNA upstream 169884 17098123 ~ 17098469 (-) True G52728
TU71092 lncRNA upstream 173994 17102233 ~ 17102466 (-) True G52729
TU71135 lncRNA upstream 229266 17157505 ~ 17157905 (-) True G52759
XM_022670292.1 mRNA downstream 394634 16406719 ~ 16427613 (-) True zcchc4
XM_022670290.1 mRNA downstream 447906 16363613 ~ 16374341 (-) True LOC103032046
XM_022670951.1 mRNA downstream 465287 16350939 ~ 16356960 (-) True LOC111192725
XM_007230746.3 mRNA downstream 631214 16163565 ~ 16191033 (-) True LOC103028883
XM_022670286.1 mRNA downstream 662538 16141692 ~ 16159709 (-) False shbg
XM_022670297.1 mRNA upstream 261576 17189815 ~ 17464293 (-) False LOC103037795
XM_022670298.1 mRNA upstream 261576 17189815 ~ 17464293 (-) True LOC103037795
XM_022670301.1 mRNA upstream 539812 17468051 ~ 17476591 (-) True LOC111192622
XM_022670308.1 mRNA upstream 720212 17648451 ~ 17665261 (-) True LOC103035515
XM_007241903.2 mRNA upstream 740425 17668664 ~ 17669725 (-) True LOC103035822
TU70997 other downstream 232464 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 232464 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 394634 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 595073 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 636935 16182735 ~ 16185312 (-) True G52493
TU71687 other upstream 1658162 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 2921711 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 3374296 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 3753572 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 3855499 20783738 ~ 20787618 (-) True G53598

Expression Profile