RNA id: XM_022670301.1


Basic Information

Item Value
RNA id XM_022670301.1
length 2143
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC111192622
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17468051 ~ 17476591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggtaggtagttaggtagCTAGAATAAAGGTAGGTTGAAAGGTGAACTTGAAAGGTAACCTtgaaaggtaggtaggtaggtagtttgTTAATCAGTTAGGTAGGTAGAAAACAGTTAGGTGGATAGGTAGACTTGATAGGTAGGCagttaggtaggtagttagaaaagaagaagaatgaagTCTGTAACAGCAGAAGCTGAAGGACAGGAGCTGACTGAGTTTGAGTCTGAGCTGAGAGAAGGTGAGATGAGAACTGAAGATGTTCTGGACGTTGTGGATTGTGAGGATTGTGAGGATCACTGTCAGAACGCTGATGGACGTTTGGATGATGTGGACGGTGATCAGGGCTCCGTGTTGCTCTGGGTACCCACTGGCCGTCGACTCGTCTCCGGGCTCCTGGGGCTGAACGTGGTGCTCCTGGGAGCCGCGCTGGTGGCTGGAGATGCTTTCCACCCTGAAGGTTTGCACCACCAGGAGCCGGAggtgtttctgctgctgctgatggcgCTGAGCGTGGCGTGGATGCTGTGGTACCTGCTTTGGGCACGGAAACAGCCAGGATTACCCCCACACACGGACCACCATGCAGGGGGCATCACTGTTACTGTGGTGTTAATGCTGTTTGCAGGCTTCAGTCTGttgctgtgtgtgttcatgATGGTTCATAACGTGCTGATGAAGGACTGTCACCCATCTGCTCGAGTTCTTCTACCGTTCATTCAAACTCCATTCCTCTGCCTCCAGACCTATCTGCTGTGGGCTCACTCCAAAGACTGCATCCACAAACACAGAATCCTCACAAGGTCTGGTCTAATGCTGATCCTGTGTACAGATATCCTGCTGTGGTTGAGCGCAGTAACAGAAGATTCCATTCATATGGAGATCGAGCTGGAGAGACAGTACAAACAGCCCATCATCAGAGCACAGTTAGacGAGGACGAGGGCATCAGAAATGCCTCAGATTGCCACTGTGGAAAGCAGCCGGTGTGCGGATCTCTGCGAAAAGGCTACGAGGTGCTGTACCCCTTCAACATGGAGTTCAGCCTGCTTGCGGGGTGCATGCTCTACGTCATGTGGAAGAACGTGGGCCGTCACGTGACCGGCACTCACTCGGGTCACGCCCAGAAGATCACCATGCGGATTGTGCACCACGGGGGCATCCTGCTGGGCCCTGTGCTGGGGCTGCTGGTTCTGATCACGGGGGTGGTGATCTTCGTGCTGTACCAGGTGTGGGTGGGTCAGCGGGGGAGGCGGCTCAGGGCCTTCCTGCTGTTCTACGGTTTCCACCTGAGCGTTATGCCGTTTATGGCGCTGTGCTCGCTGGTAGGCATGCTGGTGTACCGCCGAAAAGAGAGGCTGCCCAGCAGGGGGCGTGACAGGAAGCACGAGGACCCGGCGGTGAAGAACCCGACCCGTAGCCTGGacgtgctgctgctggtggggTCCGGACTGGGCCAGCTCTCTCTTTCATATTTCTCCCTGGTTGCTGCTCTCGCTGAGGGACCCAGAGGCATTCTGGGAAGTCTGGATCTGTCGTTTTCGCTGCTGAGCCTGCTGGAGCTGGTCCTCCAGACCATGTTCATCATCCAGGGGCTGCAggaacacacacatccacaccagAACACACACTCGAGTCGAACCGGGAAAGAGGAGAAGGAGTCAGCAGATGGGAAGGGAGCTTTTAAGATGGAGAAGACAGCTGAAGGTGCTGCTGGTTCTGCTGATATGGCTGAAGGAACAGCGTTCCTACAGAAAAGCAGTGATGCTGAAGCGTCCCCTGCAGGAACACCTGGACAAAACACTCATTCCTGGAGCAGGAGGACGATTCAGGAGATCTGCGCCTTCCTCATTCTATCCAACGTCAtgctgtgGGTGATTCCAGCGTTCGGGGCCCACCCTCAGTTTGAGAGTGGTTTGGGGAAGCAGTTTTACGGGTTCTCAGTCTGGTTCGTGTTGGTGAATCTGGGTCAGCCGCTCACTGTGTTCTACAGGATGCACTCGGTTGGAGCTCTGATGGAGCTGCTGATCTTCGCATGaactcaaaaacacatttacttaTTGCTCTATAAAATGCTGTGTATTGTTACTGTCTCTATGTAAAGAAGTTCCAGTGCTAggtattatatatctatttaggCAGTA

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71131 lncRNA downstream 216428 17187540 ~ 17251623 (-) True G52757
TU71135 lncRNA downstream 310146 17157505 ~ 17157905 (-) True G52759
TU71092 lncRNA downstream 365585 17102233 ~ 17102466 (-) True G52729
TU71091 lncRNA downstream 369582 17098123 ~ 17098469 (-) True G52728
TU71084 lncRNA downstream 390097 17030713 ~ 17077954 (-) True G52722
TU71257 lncRNA upstream 117025 17593616 ~ 17645708 (-) True G52850
TU71259 lncRNA upstream 166326 17642917 ~ 17645708 (-) False G52850
TU71305 lncRNA upstream 299291 17775882 ~ 17791944 (-) True G52891
TU71390 lncRNA upstream 402216 17878807 ~ 17879433 (-) True G52946
TU71395 lncRNA upstream 432897 17909488 ~ 17910071 (-) True G52947
XM_022670297.1 mRNA downstream 3758 17189815 ~ 17464293 (-) False LOC103037795
XM_022670298.1 mRNA downstream 3758 17189815 ~ 17464293 (-) True LOC103037795
XM_022670300.1 mRNA downstream 539812 16822247 ~ 16928239 (-) False LOC103024300
XM_022670299.1 mRNA downstream 539812 16822247 ~ 16928239 (-) True LOC103024300
XM_022670292.1 mRNA downstream 1040438 16406719 ~ 16427613 (-) True zcchc4
XM_022670308.1 mRNA upstream 171860 17648451 ~ 17665261 (-) True LOC103035515
XM_007241903.2 mRNA upstream 192073 17668664 ~ 17669725 (-) True LOC103035822
XM_007259717.2 mRNA upstream 1105289 18581880 ~ 18610419 (-) True grem2
XM_007259720.3 mRNA upstream 1167864 18644455 ~ 18648875 (-) False nat9
XM_007259719.3 mRNA upstream 1167864 18644455 ~ 18648875 (-) True nat9
TU70997 other downstream 878268 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 878268 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 1040438 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 1240877 16226236 ~ 16227174 (-) True G52503
TU70793 other downstream 1282739 16182735 ~ 16185312 (-) True G52493
TU71687 other upstream 1109810 18586401 ~ 18667287 (-) True G53164
TU71983 other upstream 2373359 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 2825944 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 3205220 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 3307147 20783738 ~ 20787618 (-) True G53598

Expression Profile