RNA id: XM_022670315.1


Basic Information

Item Value
RNA id XM_022670315.1
length 2269
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC103028095
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18696994 ~ 18728233 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCCAGAGGTTCAAGCTGCAGGTGCGACAGGTGGAGGACTACCCTGTCGACCTGTACTATCTGATGGACCTGTCGTACTCCATGAATGATGACCTGTCTCAGCTTAGGAGACTCGGAAAGGGTCTGGCGGAGGAGATGAGTAAAACCACCAGCAATCTCCGAATGGGTTTTGGGGCTTTCGTGGATAAACCTGTGTCTCCGTACATGTACATCTCTCCACCAGAAGCTGTGAAGAACCCATGCTACTCAATCCCGTTTAAATGCCAGCCGCAGTTTGGCTACAGGCACGTGCTGTCGCTGACGGATGAAGTGGGTCGCTTCACAGAGGAGGTGAAGAAGCAGAAGGTTTCTCGTAATCGTGACGCTCCGGAGGGGGGATTTGACGCCATCATACAGGCAGCCGTGTGTAAGGACAAGATTGGTTGGCGGCCGGATGCTTCCCACCTGCTGGTGTTCACTACTGATGCTAAGACTCATGTAGCGCTGGACGGACGCTTGGCGGGCATTGTGCGACCTAATGATGGCCAGTGCCATGTGGGCGAAGACAACGTCTACAACATGTCTACTACAATGgaCTACCCATCCCTTGCTCTGATCACGGAGAAGATGTCTGAGAACAACATAAACCTCATCTTTGCTGTCACCAATCCTGTTGTACCTCTTTACAAGAATTACAGTGATCTAATCCCGGGTACAGCAGTGGGAACTCTGTCTGAGGACTCACGCAATGTCATCCAACTGATCCAAGATGCTTATGCTAAAATTCGCTCTAAGGTTGAGCTGGAGCTCTTGAATGTTCCAGAAGAGCTGAGTCTCTCCTTCACTGCAACGTGTCTGAATGGGGAGGTGATACCAGGTCTCAAGTCCTGCTCTGGACTCAAAAGAGGAGATACGGTATCCTTCAGCGTAGAGGCTCGTGCGAGGGGCTGCCCCAAAGAGAAGCGCAAGACTTTCACCATCAAACCCGTGGGCTTCAAAGACGCTCTGCAGATCACCGTCGACTTCGAGTGCCAGTGTAAGTGCCAGGCTCTGGGCGAGCCCGACAGTCCCGTGTGCCACCACGGCAATGGCACCTACGAGTGTGGCATCTGCATGTGCCACCCCGGCCGCCTGGGCCCCAGGTGTGAGTGTGCGGAGGGAGACTACAGCCCCAGCGAGCAGGACACCTGCAGCGGCCCAAACAAGGTGGTGTGCAGTGGCCGgggagactgtgtgtgtggtcagtgtgtgtgtcacaACAACGACTTCGGCAAGGTGTGGGGGAAGAGGTGCGAGTGTGATGACTTCAGCTGCCTGAGGTATAAAGGAGAGCTGTGCTCAGGTCACGGCACATGCTCGTGTGGGTTCTGCCAGTGTGACCCGGACTGGTCGGGTGAGAACTGTAACTGCTCCACACGTCTGGACACCTGCATGTCCACCACAGGCTCCCTGTGCAGCGGCCGAGGGCAGTGTGTGTGCGGCAGCTGTGAGTGTACCCAGCCCGGGGCCTACGGATCCACCTGTGATAAATGCCCCACCTGCCCTGATGCCTGCACCATGAAGAAGGACTGTGTGGAATGTAAGCATTTTAAACGAGGTGCGCTGTTTGAGGACGACAGCTGTGCTCGCATTTGCAGAGATGAGATTGTGCTGGTTGATGATCTGGTTCTCCACGACAAGAATGCTGTGAACTGTACCTACAAGGACGAGGATGATTGTGTGCAGAGGTTCCAGTACTTTGAAGATAACAGCGGGAAGTCTATTCTGTCTGTGGTGAAAGAGCCAGACTGTCCTAAAGGCCCTGATATCCTGGTGGTGCTGCTCTCGGTTGCTGGCGCTATACTGTTCCTGGGTCTCGCCGCCTTGCTGATCTGGAAACTGCTGGTGACCATCCACGACCGCCGCGAGTTCGCCAAATTCGAGGAGGAGCGAGCAAAAGCCAAATGGGACACGAGCCACAACCCTCTCTACAAAGGAGCCACGACCACTTTCACCAACATCACCTACCGAGGAAAAGACTAACAGACCCTCACCATCGTCACTGCAGCTGCAGCCATGCGGGAATTTAttaataactgtaaaaaaaaaatactgttatcaTTTTATATTTGGAGGATGTACATTTTCtgtctgtaaataataatatgacAGGTGGTTTAATGAAGTATCTTGTATTTAGTCATCACACGTTTTGATGATTGCAGTCAGTGTATTATGCATTCTGtgtttttggtaccactttaaaataagactaccttcataaagggtttatacaatagtttattaatg

Function

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007044 cell-substrate junction assembly biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0060055 angiogenesis involved in wound healing biological_process
GO:0008305 integrin complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06493 ITGB3, CD61; integrin beta 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71703 lncRNA downstream 50118 18645879 ~ 18646876 (-) True G53175
TU71646 lncRNA downstream 293594 18402279 ~ 18403400 (-) True G53139
TU71640 lncRNA downstream 297846 18350272 ~ 18399148 (-) True G53135
TU71716 lncRNA upstream 49928 18778161 ~ 18867587 (-) True G53184
TU71720 lncRNA upstream 50481 18778714 ~ 18786708 (-) True G53185
TU71740 lncRNA upstream 120496 18848729 ~ 18892877 (-) True G53199
TU71753 lncRNA upstream 199093 18927326 ~ 18927932 (-) True G53209
TU71774 lncRNA upstream 389233 19117466 ~ 19119925 (-) False LOC111192726
XM_007259722.3 mRNA downstream 7393 18656832 ~ 18689601 (-) True LOC103024498
XM_007259723.3 mRNA downstream 7394 18656832 ~ 18689600 (-) False LOC103024498
XM_022670314.1 mRNA downstream 7394 18664458 ~ 18689600 (-) False LOC103024498
XM_007259721.3 mRNA downstream 7395 18656832 ~ 18689599 (-) False LOC103024498
XM_007259720.3 mRNA downstream 48119 18644455 ~ 18648875 (-) False nat9
XM_022670316.1 mRNA upstream 1810 18730043 ~ 18741304 (-) True LOC111192624
XM_022670896.1 mRNA upstream 394387 19122620 ~ 19143280 (-) True LOC111192707
XM_007239985.3 mRNA upstream 709400 19437633 ~ 19459375 (-) True LOC103025356
XM_022670332.1 mRNA upstream 794469 19522702 ~ 19570378 (-) True LOC103025665
XM_022670333.1 mRNA upstream 877322 19605555 ~ 19670670 (-) True LOC103036701
TU71687 other downstream 29707 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 2107211 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2107211 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 2269381 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 2469820 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 1121717 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 1574302 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1953578 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 2055505 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 2089606 20817839 ~ 20819409 (-) True G53607

Expression Profile