RNA id: XM_022670333.1


Basic Information

Item Value
RNA id XM_022670333.1
length 3223
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC103036701
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19605555 ~ 19670670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGAGCTCAGAGCGCTATCGACCTTTAAAGCGCCCGGAGAGAGGAGCAGCTCAGACTGGGAGAGGGAGTGCGATCCTCGGCAGTGTTCTGAGACTGCACTCGACCAATCCCACCAGCACCAGTACCGGTACCGGTACCAGTACCGGAGAACTACCGCACAAACCCCCCGGACTCAGCATGGACCCTCAGCAGGGGAGATAACCACTGGTGGATGTTCTGAGTTccagttgagttgagttgctGTTTAGAGTTGAGTTGAACTGAGTTGAGTTGAACAGAGTTGACTTGAATAGAGTTGAGTTGAACAGAGTTGAGTTGAACAGAGTTGAGTTGAATAGAGTTGAGTTGAATAGAGTTGAGTTGAACAGAGTTGACTTGAATAGAGTTGAGTGAAGGACGTTCTTCGAGCTGGATCTTCTCTCCCACAGGACTCAACCATGAcctcagagaaagagaagagaagGCACCCGTCGGAGCGGCGGAAGGAGAAGTCGCGGGACGCGGCGCGCTGCAGACGCAGTAAAGAGACGGAGGTGTTTTATGAGCTGGCTCATCAGCTGCCCCTCCCTCACAGCGTCCGCTCACACCTGGACAAAGCCTCCATCATGAGACTCACCATCAGCTTCCTCCGCACACGCAAACTGCTGGCATCAGGCTGCATGGGCCGACAGCCGAAAGAGGACATGCAGATGGACGCTCTGTACCTGAAGAGTCTGCAGGGCTTTGTTGTCGTGGTGACGTCAGAAGGGGACATGATCTTCCTCTCGGAGAACGTCAGTAAATTCATGGGTCTGACACAGGTGGAGTTAACGGGACACAGCATCTTCGATTTCACGCACCCCTGCGATCACGAGGAGATCCGGGAGAACCTCAGCATTAAAGcagGGCCGGTTTATGGCAGGAGGTGTAAAGAGCTGAACACGGAGAGAGATTTCTTCATGAGGATGAAGTGTACAGTTACCAGCAGAGGACGTACCGTCAACCTCAAATCAGCCACATGGAAGGTTCTCCACTGTACAGGTCATTTAAAGGTGTACACCAGCTGCCCCCCGCACGTGTTATGTGGATTTACGGAGCCCCCCCTCACCTGTGTGGTCATGTTATGCGAGCCAATCACAAACCCCTCCAATGTGGACACGCCCCTCGACAGCAAAACCTTCATGAGCCGACACAACATGGACATGAAGTTCATCTACTGCGACGAGAGGGTGAGATCTCTAATGGGCTACAGGCCTGAAGATTTGGTTGGACGCTCTGCGTATGACTTCTACCATGCGCTGGACTCCGACAGCATGACCAAGAGCCACCAGAATCtgtgtgctaAAGGGCAGGCGGTGAGCGGGCAGTACCGGATGCTGGCCAAACATGGAGGCTACGTGTGGGTGGAGACTCAGGGCACAGTGATCTACAACAGCCGTAACTCTCAGCCGCAGTGCATCGTCTGCATCAACTATGTTCTCAGTGAAATTGAAGAGAAAACCATCGTCTTCTCCATGGACCAGACGGAGGCGCTGTTCAAGTCCCGCGACATGCTGGGCGCCGGCGAACTCTTCTGCCAGGCCGGCTCGGTGTCGGACCCGGATAGCCTGCTCTTCAACAAGCTGAAGGAGGAGCCCGAGGAGCTGGCACAGCTGGCGCCCATGCCTGGAGACGCCATCATTGCCCTGGACTTTGGAAGGCCACAGTTTGAAGAGCAGTCCATCTTCTACAAATATCCCTGTCAGACTACAGGCAGCAAACTGTGGAAAATGGACTCTCCAGCTTCCAGCTCCGACAGCGGCCTGCCCAGAACCCTGTCCGACTCCATGCCCAGCCTGAACAacatcagcagctgctccacTCCTGAGAGTTCAGGAGGAGATTTTTACGGCACCGGAGAGAATGAGCTGAAAGTAGAGCTGACAGAAAGACTGTTCGCCCAAACCACCGAGTCCAACAGTCCCACTGAtacacagTTTGATCTGAATGATCTGGATCTGGAGACGCTGGCTCCCTACATCCCTATGGATGGGGAAGACTTCCAGCTGAACCCCATTGGTCAGGAGGAGCCTCTGCCTGAGGCGTGTCCGAGTCTGTACCCCACCCCCCAGCACAGCTTCAACTGCGTCACCCGCCTCTTCCAGCCCCTCGCCCCCTTCACCCCTGACACCAAGACCTGCCCCAGCACCTACCCCAACCCAGACATCCTGCCCCCATACCAGAGCCCTGCCACCACCCCGCTGCCCTCCAGAGGGGGCCGGCAGAACCTGCAGTGGCCCCCAGAGTCCTCTCTACAGTATGGAGGACCGGAGCTGGACGGACAGAATCTGACATGTGCTCAAAACCAGCAAAGAATTTTTGAAGACTTCGCTAAGCCATGTGATGACCTGGGCCTTGATCAGATTCCACCGTCCGCCAATTTTAAACGCAAGAGGCAGACCGTGTTCAGCTCCTCCTGCTCTTTCTCAAACACCCCTCAGGAGGGAATTCCTCGTAGCGAATCGATGGAAGACTTGTGGAAGCGAATGAAGACGATAACCAATGACAACTGTGCCTTTACCGCCAGAAACCCCACCAGCTCTGCAGTGCTTGAAGaCACTTTCTCATCCAGACCAGCAGCGGTGGATTCTCAGATCAGTGGAAATCAGCTTCCTCCAAACAAGCCGAGCTTCAGAGAGCACAAACGGCCTTTCACTGAGCATTTCTGCCCCCCTGAATTCAATCAGTACAGCATGCTGCCCTCCCCCAAACCCACAGggatGACGAGTCGACTGCTGGCTCCGTCGTTTGACTCGTTCTGTCTGACGGAGCTGACGCAGTACGACTGCGACGTGAACGTGCCGCTGCAGGGGAACCTCCACCTCCTGCAGGGCAGCGACCTTCTCAAAGCTCTGGACCAGGCCACatagaaccagaaccagaaccaagaGAACCACCCTGACCCGGTCCTTCAGCCAATACTGTGCCTAACAATCAGCATGCCTCACTCTCAACAGCTGCCTTTACCACACACCCagagactacacacacacacatttatatacacacacacaaacacacacacacaacacgaCACGGATGTAatgtgtattatatttttatctaagagttgttacttgtttataAGACTGTATACTTTTACTGATCTCTCTACGTGTTGCATATTCCGCTCGTGTTCAAGCATATTGAAGacaataatgtattaaaatatagaaagtctataaaaaaatactacatcTGCCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K09095 HIF2A, EPAS1; hypoxia-inducible factor 2 alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71956 lncRNA downstream 3153 19596775 ~ 19602402 (-) True G53357
TU71947 lncRNA downstream 81783 19522728 ~ 19523772 (-) False LOC103025665
TU71938 lncRNA downstream 99051 19503610 ~ 19506504 (-) True LOC111192626
TU71939 lncRNA downstream 99051 19503610 ~ 19506504 (-) False LOC111192626
TU71940 lncRNA downstream 99051 19503610 ~ 19506504 (-) False LOC111192626
TU71960 lncRNA upstream 50472 19721142 ~ 19795467 (-) True G53361
TU71961 lncRNA upstream 124474 19795144 ~ 19795467 (-) False G53361
TU71972 lncRNA upstream 128515 19799185 ~ 19799391 (-) True G53372
TU71974 lncRNA upstream 133714 19804384 ~ 19804714 (-) True G53374
TU71975 lncRNA upstream 135625 19806295 ~ 19806499 (-) True G53375
XM_022670332.1 mRNA downstream 35177 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 146180 19437633 ~ 19459375 (-) True LOC103025356
XM_022670896.1 mRNA downstream 462275 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 864251 18730043 ~ 18741304 (-) True LOC111192624
XM_022670315.1 mRNA downstream 877322 18696994 ~ 18728233 (-) True LOC103028095
XM_022670334.1 mRNA upstream 11721 19682391 ~ 19839582 (-) True LOC103034301
XM_007235647.3 mRNA upstream 231623 19902293 ~ 19906073 (-) True LOC103035166
XM_007235649.3 mRNA upstream 371827 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 379574 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 645346 20316016 ~ 20392201 (-) False LOC103047709
TU71687 other downstream 938268 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3015772 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3015772 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3177942 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3378381 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 179280 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 631865 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1011141 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 1113068 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1147169 20817839 ~ 20819409 (-) True G53607

Expression Profile