RNA id: XM_022670334.1


Basic Information

Item Value
RNA id XM_022670334.1
length 3530
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC103034301
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19682391 ~ 19839582 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgagtgagtgacagaGTGAGCGAGCGCAGCTCCAGCCCCACTGCGCGCTCGGACACGGGCGGCTCAAAGAGCGCGGACGGATCCTGCTGCTATCCGCAGCTCACGATACATACACGCAAAACGCGCGCGCGCTCGCTCTTGCACGCGCGGCACGCACGCGCATAAACACACAAGGCTAGACCAGCCACACGGCTTAAGGCTGccagagaaggaggaggaggaggattgcCCAGACCGATGGCTGCTGCGCGTTCATGAGGCTCGCCCACTGGAAGACCTTCACGTTCATACTGGGATAATTCAGGCTACTGGGATAATTCAGGCAACTGGGATCAGTCGTTTTCCAGCTTCTCCTGATTTCCACGTTTTTCCACGCGCTTTTCGCGCTTGGGAGTAACGTTATTCCCTGCGCTCGCGCTCTCGAGACTGATCAGTCTGGGCTCTGCCAGAAGGGGAGGATTCCTGTCCAGCTgatcacaacaacaacaaacgaGGAGCATCAAAGAAGAACAGCCAGCGTCTTCTGCTAATGATGATGATATTCTGCTGATCTTCTGCTGCTTTGATCTTTCGAGCTTCAGGATTTCGCACCTGACCTGTAGATATATTGTCTAGTCTAGCCTATATTGGTCCAGTCTCTCCACGTATGTCATAGGAACCAGAAGAAGAGACAGAACAAGAACCAGACGCATCTATTGACCTGACCAGATTGCAGACCAGCAATCCATCCACCTTCTTCCATtcttccattcatccattcattcatctatcTATTAATTTATCAATCTATCTACATGCATCGCtccacactgctgctgccaccGCCATCCTAACCACCGCCACCACCGACCCTGCCCCGACGGTACCAACTGCCATGTGAACCCTCCGCATTATCCGACGCTCCGTGGGTGCAACCAGTTGCATTCGGCCCCcgtcttcatcatcatcagcagcatcatcatcatcaccaccatcagcatcatcatGGTGGTCTACAACGGCTTGCTAAAGATCAAGGTGTGCGAGGCGCTCGACCTCAAGCCCACCCCCTGGTCGCTCCGCCACGCCGTCGGCACCCGCACGCAGGGCTTCCTGCTGGACACCTACATCGCCCTGAACGTGGACGACTCTCGCGTGGGCCAGACCTCCACCAAGCAGAAGACCAACAGCCCCGCGTGGAACGACGAGTTCGTCACCGAGGTCTATGACGGCAAGAAGATCGAGCTGTCCGTCTTCCACGACGCGCCCATCGGCTACGACGACTTCGTGGCCAACTGCACCATCCAATTCGAGGACCTGCTGCAGAACGGCAGCCGCCACTTCGAGGACTGGATTGACCTGGAGCCTGAGGGCAAAGTGTACGTCATCATCGACCTGTCAGGATCCTCCAGTGAAGCTGCTGCATCCAGTGAAAATGAGGAGCGAGTTTTCCGTGAACGCATGCGGCCCCGGAAGCGGCAGGGGGCGGTACGGAGGCGTGTCCATCAGGTTAACGGACACAAGTTTATGGCCACCTACCTGAGACAACCCACTTACTGTTCTCACTGTAGAGACTTCATCTGGGGAGTGTTAGGAAAGCAGGGCTACCAGTGTCAAGTGTGTACCTGTGTGGTCCATAAACGATGTCACGAGCTCATCATCACAAAGTGTCCCGGCCTGAAGAAGCAGGACGACACTCCAGAGGAGgtCGGTTCACAACGCTTCAGTGTGAACATGCCTCACAAGTTCAGTATTCACAACTACAAAGTACCTACCTTCTGCGACCACTGCGGCTCGTTACTGTGGGGGCTGCTGAGACAGGGGCTGCAGTGCAAAGTCTGTAAGATGAATGTTCATCGGCGCTGTGAGACTAACGTAGCTCCTAACTGCGGAGTAGACGCTAGAGGAATCGCTAAAGTCCTGTCGGATCTCGGAGTGACGCCAGACAAAATCTCCAACAGCACCCAGCGCAGGAAAAAGCTGACTCCAGGTCAGGAAGCCCAGCCGTCCGCCTCAGAACCGGCCTCATCAGACGACTCCGACCGCTGCAAATCAGCGCCGACGTCACCATGTGATCAGGAGCTATCAGAGCTGGAAAGCATACGGAAAGCGTTGTCATTTGGCCAGGAGCACAagtcttcctcctcctcctctatgAGCAGTGGGCTTCAGGGCACAGGAAGTGAGGGCCGCGAGAACGGAGACTTGAAGAGCATCCAGTCGAAGAGGATGAACCTGACTGACTTCTCCTTCATCAAAGTACTGGGAAAGGGCAGCTTCGGAAAGGTGATGCTGGCGGAGCTGAAAGGCTCTGATGAGGTTTACGCTGTAAAGGTGCTGAAGAAAGACGTAATCCTGCAGGACGACGATGTGGATTGCACCCTGACTGAGAAACGCATCCTGGCTTTGGCCAGAAAACACCCCTACCTGACCCAGCTCTTCTGCTGCTTCCAGACCAAGgatcGGTTGTTCTTTGTAATGGAGTATGTGAATGGAGGAGATCTGATGTTTCAGATCCAGCGCTCGCGGAAGTTTGACGAGGCTCGCTCGCGTTTCTATGCTGCTGAAGTTACTTCTGCCCTAATGTTCCTGCACCAACATGGCGTCAtctacagGGACCTGAAGCTCGACAACATCCTGCTGGACGCCGAGGGTCACTGTAAGCTGGCGGACTTCGGCATGTGTAAAGAAGGCATCCTGAACGGcgtcaccaccaccaccttctGCGGCACACCGGACTACATTGCTCCTGAGATCCTGCAGGAGCTTGAGTACGGGCCGTCGGTGGACTGGTGGGCGCTGGGGGTCCTGATGTACGAGATGATGGCGGGTCAGCCCCCGTTTGAGGCGGATAACGAGGACGATCTGTTTGAGTCTATCCTGCATGACGACGTGCTGTACCCGGTCTGGCTCAGCAAGGAGGCCGTCAGCATCCTCAAAGCATTCATGACGAAGAGTCCGAATAAACGGCTGGGATGTATGGTGTCTCAGGGCCTGGAGGAGGCCATCAAAGTTCATCCCTTCTTCAGAGAGATAGACTGGGTTCTCCTGGAGCAGAGGAAGATAAAACCTCCATTCAAACCACGCATCaaAACCAAGAGGGATGTGAATAATTTTGATCAGGATTTCACACGGGAAGACCCCGTCCTCACTCCTGTGGACGACGCCATCATTAAACAGATCAACCAGGAGGAGTTCAAAGGCTTCTCATACTTTGGAGAAGAGACATTGGCCTGAAATTTAGCAGCGTGGAACCATtccacactgatacacactcatacacatacatgtacacccttacactcacacacacttgcacacacacaaaaacatatacGTACGTCTGGTGAGAaatgtgaatgggcagaagtgcTGGTGACAGGGTAGGCTAAAACTGAGGCTAAAGATATGGCTAAGGCTATATGACTGTGTCTAAGGATATGGCTTAGGCCAAGGCTAAGGCTAGGTCTTTTTTAAGGCTGTGGCTAAGGCTATATGGCTAAGAAAAATGCTAGGCCTTTGCTAAGGCTATATGGCTAAGGCTATATGG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71957 lncRNA downstream 26547 19600392 ~ 19655844 (-) True G53358
TU71956 lncRNA downstream 79989 19596775 ~ 19602402 (-) True G53357
TU71947 lncRNA downstream 158619 19522728 ~ 19523772 (-) False LOC103025665
TU71940 lncRNA downstream 175887 19503610 ~ 19506504 (-) False LOC111192626
TU71981 lncRNA upstream 9238 19848820 ~ 19849065 (-) True G53380
TU71985 lncRNA upstream 37912 19877494 ~ 19877718 (-) True G53384
TU72094 lncRNA upstream 168365 20007947 ~ 20008162 (-) True G53462
TU72099 lncRNA upstream 193272 20032854 ~ 20033088 (-) True G53467
TU72089 lncRNA upstream 193781 20033363 ~ 20034632 (-) True G53457
XM_022670333.1 mRNA downstream 11721 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 112013 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 223016 19437633 ~ 19459375 (-) True LOC103025356
XM_022670896.1 mRNA downstream 539111 19122620 ~ 19143280 (-) True LOC111192707
XM_022670316.1 mRNA downstream 941087 18730043 ~ 18741304 (-) True LOC111192624
XM_007235647.3 mRNA upstream 62711 19902293 ~ 19906073 (-) True LOC103035166
XM_007235649.3 mRNA upstream 202915 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 210662 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 476434 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 476434 20316016 ~ 20392201 (-) True LOC103047709
TU71687 other downstream 1015104 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3092608 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3092608 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3254778 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 3455217 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 10368 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 462953 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 842229 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 944156 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 978257 20817839 ~ 20819409 (-) True G53607

Expression Profile