RNA id: XM_022670340.1


Basic Information

Item Value
RNA id XM_022670340.1
length 2095
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC103047709
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20316016 ~ 20392206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtgagttactgtattgtactgtgtACTAATCTTAGGAGGGGGGCTCCTcaacaaaacacactgaaaaaaagaaaaaggaaagaggGGGGAACAGAAAGTAGCCTCCCGCTCATCTCGTGCTTCATTCACCCCCACCTCTGTAGCTGTAACTGTAACAGCGTATAACCTAGCTACCGCTTTTATTAGTCCGCTGTGCAGCACAACCGCTTTTTATTTaggcctttatttatttcttttagtttaTGGTCTGGTTTTTTAACACTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAGATTATGTCTTTTTCGAGAATTCTTCAAGCAATCCTTATCTGATCCGGAGAATAGAGGAACTGAATAAGACGGCGAGTGGCAATGTGGAAGCGAAGGTGGTCTGTTTCTACAGGAGAAGGGATATCTCACAGAGCCTCATCCAGCTGGCAGACAAGCATGCAAaggacctggaggaggagaaggaaagCCCTACAGAGCCAGACCTCagtgagaaacagaaacaccagCTCCGACACAGAGAGCTCTTTCTGTCCCGTCAGTATGAATCACTCCCTGCTACACACATCAGggGGAAGTGCAGCGTGGCCCTGTTAAACGAGACCGAGTCAGTACTCTCCTATCTGGACAAAGAGGACACCTTTTTCTACTCGCTGGTGTATGACCCCACACAGAAGACTCTGCTGGCAGACAAGGGGGAGATACGGGTTGGTCCGCGCTTTCAGGCAGATGTTCCTGAGATGCTACAGGAAGGAGAAGCAGATGACCGAGACCAGTCCAAGCTAGAAGTGAAGATGTGGGACCCAGAATGCCctctgaccaataagcagaTAGACCAGTTCCTTGTAGTAGCTCGGGCGGTGGGGACCTTTGCTCGCGCTCTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGTGCTGCCGCGGCGTCGCGGGACATCACACTGTTCCACGCTATGGACACACTTCACCGGCACGGCTACGACCTCTCGAGTGCCCTGAGCGTTCTGGTGCCTCAGGGGGGCCCGGTGCTCTGCAGGGACGAGATGGAGGAGTGGAGCTCCTCAGAGGCCAACCTGTTTGAGGAGGCGCTGGAGAAATACGGCAAGGACTTTAACGACATCCGGCAAGACTTTCTTCCTTGGAAGTCCCTGACTAGCATTATTGAGTATTATTACATGTGGAAAACCACAGACAGATATGTGCAGCAGAAACGACTGAAGGCAGCTGAAGCAGAGAGTAAACTAAAGCAAGTCTACATCCCCACATAtaataaacccaaccctaaccagATTTCTGTCAGTAACGGCAAAATGGCCACCATGAACGGTGCAGCGGGTCCGGGCCCCTTCCACACAGCCGGCGGGGGCCGTGCCTGCGAGAGCTGTTTCGCCATGCAGTCTCCTCAGTGGTACTCCTGGGGTCCTCCGAACATGCAGTGTCGCTTATGTGTCTCCTGCTGGATGTACTGGAAAAAGTACGGTGGCCTCAAGATGCCAAGCAGAGCTGAAGGAGCAGAGGAGAAAACGCCTCCAAGCCCTGCTGCGACTGAGATGCGTTCGCGTGGCCACACCCTGCGCCAGACCTCCCACATGGTTCCGGTGAGGAACAGCGGCAGCCCCAAATCCTCCATGAAGACCAAGCAGGCCTTCCTGCTGCAGGCCACGCGCCTCACCAAGCTCGCACGTCACATGTGCCGCGACCTCATCAGGCTGCGCCGGGCTGCGCGCCGCCCCTTTGTGCCCATTAACTGTGGCGCCATAAAGGCGGAGTGATATAGGAGAACCTAAGCACCTTCAGGAAGGCAGTGTAGGTTAGACAGCTTGGACTGCAGAGGAAAGAGCAAGCTGAGGCCAGTTTGGATCAGGCAAGGATGTTGTGTTTAATGCAGGAACTGCACAAACAATACGTTAACCATCAATTATTGAATTACTTTACATTATGAGTCAGTTTTACACACAGGGATAAAGCCTTGTTTTGGactgcacagcattttgaatggggATTTAAATTATTCCTGTCTGGGGTagatactagtgcatctaaacatatataaatata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72137 lncRNA downstream 27327 20314294 ~ 20315583 (-) True G53500
TU72139 lncRNA downstream 28864 20313128 ~ 20314046 (-) True G53502
TU72102 lncRNA downstream 226911 20059899 ~ 20115999 (-) False G53469
TU72206 lncRNA upstream 151409 20543604 ~ 20550201 (-) True G53554
TU72214 lncRNA upstream 214582 20606777 ~ 20607592 (-) True G53559
TU72224 lncRNA upstream 228528 20620723 ~ 20646509 (-) True G53563
TU72223 lncRNA upstream 229374 20621569 ~ 20690422 (-) False G53562
TU72209 lncRNA upstream 244111 20636306 ~ 20637291 (-) True G53556
XM_007235649.3 mRNA downstream 253538 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA downstream 253538 20050244 ~ 20089372 (-) True LOC103035481
XM_007235647.3 mRNA downstream 436837 19902293 ~ 19906073 (-) True LOC103035166
XM_022670334.1 mRNA downstream 503328 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 672240 19605555 ~ 19670670 (-) True LOC103036701
XM_007230972.3 mRNA upstream 149669 20541864 ~ 20556330 (-) True pigf
XM_022670343.1 mRNA upstream 170076 20562271 ~ 20568195 (-) True LOC103047390
XM_007230971.3 mRNA upstream 180217 20572412 ~ 20580604 (-) True LOC103043231
XM_022670347.1 mRNA upstream 592264 20984459 ~ 21384885 (-) True LOC103027095
XM_022670348.1 mRNA upstream 1263422 21655617 ~ 21669948 (-) False LOC103044518
trnai-uau_7 other downstream 40282 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 492560 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1675623 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3753127 16588150 ~ 16589783 (-) True G52652
TU72221 other upstream 289616 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 391543 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 425644 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2454481 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 2699111 23091306 ~ 23091975 (-) True G53996

Expression Profile