RNA id: XM_022670347.1


Basic Information

Item Value
RNA id XM_022670347.1
length 7844
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC103027095
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20984459 ~ 21384885 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGTCCCTGGCAGAGCTGAGCTCACAAACACATCGCACCTTTTTCCTCGCAGCGAACAAACGGCCAGCGACcgtccttcctcctcctctctttctcctcctcctcttcttcttctcctcctccttcttctctctcttctttttttctctctctgttttctcccGTGTTTTTCGAGGCGCAGCGCTCGTGCCTGTAGTGTCTGTAGCTGCTGCGGTAGAAGAAGGAGGACTGGGCGCTGGGTTTGGTTGGTGCTGAGCTTGACTGGAGGCTGAGGGCTGGAGGCTGAAggatgctgctggtgctggtgctgctgctgcatccaTCCGTGTCTCTGCTGAGAATCGAGTGAATCTGAATTGAATCGTTGATTCATTTGGgagtcttttttatttgttgtgttgtttgtacgttttttttttaaggggatTTGAAAAGGTTAGGCGattgctgatttatttattttttcagttttcctttttttctccccaattttgctctctAAACTGATGcagtgatttttgttttattatttaattttttggtgAACAAAGAGAGCCTGTAAAAATCAAGTCAATGCGGAAGCCATCAGCGAGCTTCTTCAGTGAGGCTGGTCGATCGAGGGGGGACTAGCCTACATGATGATGGTGCTTCTTTCAAGattGCGGATCAATACGTCAGAGTGGATGTGATTAGAAGGTTTGTGAACGGTGAAGGCCCTGCGAGGGCCGGCATATTAACCCCACTCTGAGAAgggtttagggttttttttccctcctttcctccgtcttcttcttcttttttttctgtccacCCAACGCTTCGGCCGGCGCAATGACTGTGAATTAAGCTACGCTCGTCGAGACCCGTGGCCGCCTGGTGCGCTCAGAAGTGTCCTGTAAAGAGTGTACTGGAACATCACTTTCGTGTGATGGAGACCGTGATGATGAAAAAAGGGCCAGAGTGTAGCTTAGCATTTTAGCATAGCAGCAGTGACTGGAGAGGGTTTTAGTTGAGCGCATAGCTTTAGTGTAGTCTAGTTGAAATATATCGTATAGTCTTATTTTTCTCTAATTTCAGATATAATTTGAATATGTTATGATATTCTTGGCTGCATATCTACACTACGTTAAATATGACTAGGCCCTAGCACAGGCCTTCATGTCTCTTTATCAGTGTAGAACAATGAATAAAGCCAAATTAGCCCAAATTATCTGCTGCAGCCCCATCTTTCCCATAGAAGCCATTCCTGTTTTAGGACTGGAACTCTAAAATtatcagtataaatatatatatatatatatatacatatattgcatttttgtagcttagttctattctattcatcCTTTTGATCCAAAACTCGATCCACCATGAGCTTCTCCATGCGTAACGGCGCGCACTTGATTTGGATAGGCCTGCTGGTTTGCTGCTTGGTCGACATAGGGGCGAGCATGGAGTTCACCGGCGCCGAAGGCCAGTGGGCGCGGTTCCCCATGTGGAACGCCTGCTGTGAGAGCGAGATGAGCTTCAACATGAAAACGAAGAGCTCGCACGGACTCTTAGTGTACTTCGACGACGAGGGATTCTGCGACTTCTTGGAACTGCTCATCCACAACGGTAGAATCAGCTTGCGCTTCTCGATCTTCTGCGCCGAGCCGGCCACGGTGCTGTCCGACACCGCCGTCAACGACAGCCGCTGGCACGCCGTCACGGTGCGCAGGAATTTCAAAAACACTACGCTAGTGGTGGACGACGAGATCAAGTGGGTGGAAGTGAAGTCCAAACGGAGGGACATGACGGTTTTTAGTCCTATGTTCTTAGGGGGGATACCTCCAGAACTGCGCTCCGTAGCCTTGCGCCTGACGTCCGCCTCCATCAAAGACCAAGTTCCCTACAAAGGATGGATAACCAATTTGAAGGTGAACGACTCTGAGCCGGCGATAGTCAGCAGCGACGGGATCACCAGCAACGTTTGCGAAGCTGACCACGTTTGCCTGAACGGAGGAGTCTGCAGCATCGTCAACGACCAGCCCATCTGCGACTGCTCCGAGACCGGCTTCCAGGGGAAGGACTGCAGTGAAGAAGAGGCCTACGTTGGAGGTCTTGCGCACCTGATGATGGCCGACCAAGGTAAAAGTAAAGTGAGGGAGGAGTACGTGGCGACCTTCAAGGGCTCGGAGTACTTTTGCTACGACCTGTCCCCGAACCCCATCCAGAGCAGCAGCGACGAGATCACGCTCTCCTTCAAGACCCTGCAGCGCAACGGCCTCATGCTCCACACGGGCAAATCCGCCGACTACGTCAACCTGGCGCTGAAGAACGGCGCCGTCTCTCTGGTCATCAACCTGGGCTCCGGGGCCTTCGAGGCCCTGGTGGAGCCTGTGAATGGGAAATTTAATGACAATGCCTGGCATGATGTGAAGGTTACCAGGAATCTCCGTCAGCACTCAGGCATTGGACACGCTATGGTTACAATATCCGTGGATGGAATTCTCACCACCACTGGATATACTCAAGAGGACTACACCATGCTAGGCTCCGACGACTTTTTCTATGTGGGGGGCAGTCCCAGCACTGCAGATCTGCCCGGATCCCCCGTTAGCAACAACTTTATGGGCTGCCTGAAGGAGGTTGTATACAAGAACAACGACGTGAGGCTGGAGCTGTCTCGCCTGGCCAAACAGggtgatgccaagatgaaagTGAGCGGAATCGTGGCTTTCAAGTGTGAGAACGTGGCCACCCTGGACCCGGTCACCTTCGAGACCCCCGAATCTTTCGTCACGCTCAGCAAGTGGACGGCGAAGAAGGCCGGTTCCATCTCCTTCGACTTCCGCACCACCGAACCCAACGGCCTGCTGCTCTTCAGCCACGGCAAAcccaagcagcagcagcagaaagacCCCAAAGGCCCCAAGACCATGAAGGTGGACTTCTTTGCCATTGAGATGCTGGACGGACACCTCTATCTCCTGCTGGACATGGGCTCGGGCACCACCAAGACCAAGGCTGTGAACAAGAAGGTCAATGATGGAGAATGGTACCATGTGGATTTCCAGAGAGACGGGAGATCAGGTACCATCTCTGTTAACTCTGTGCGCACTCCCTACAATGCTCCTGGAGAGAGTGAGATTCTGGACCTGGATGATGTTCTGTATCTGGGTGGTCTTCCTGAGGACCGGGCAGGTCTGGTCTTCCCCACGGAGGTGTGGACGGCTCTGCTGAATTACGGGTACGTGGGCTGCGTTAGGGACCTGTTCATGGACGGCCAGAGTAAAGACATCCGCCGCATCGCCGAGGCGCAGAGGGCCGTGGGGTCAAGCTTCCTGGgcctttttcaaaaaaaaaagggggggggccCCGGGGGGGGGGGCCCCCCAACAGTTGCCTTGGGGAAAAAAAGCAACCCCTGCCTGAACAGCGGCACCTGCAGGGAGGGCTGGAACCGATACGTGTGCGACTGCTCTGGTACCGGATACCTCGGCCGATCCTGCGAAAGAGACGCCACCATCCTCAGCTATGACGGCAGTAAGTTCATGAAGATCAAGTTACCAGTGGTGATGCACACCGAGGCAGAGGACGTGTCTCTCCGCTTCCGTTCCCAGCGAGCCTATGGAGTTCTAATGGCCACCACCTCCAGGAACTCAGCGGACACTCTGCGACTGGAGCTGGACGGAGGACGGGTCCGGCTCACTGTCAACCTAGACTGTATCAGGATTAACTGTACCACCAGTAAAGGCCCAGAGACCATCTTTGCGGGCCAGAACCTGAATGATAATGAATGGCACACAGTCCGTGTGGTCAGGAGAGGGAAAAGCCTGAAGTTAATGGTGGATGACCTGCAGCCGTCAGAAGGTCAAATCACAGGTGACCACACGCAGCTAGAGTTCCATAACATTGAGACAGGCATCATCACAGAGAAGCTCTACATGCCCGCCGTGCCGTCCAACTTCATCGGGCACCTGCAGGGTCTGGGATTCAACGGCATGTCCTACATCGACCTGTGCAAGAACGGGGACATCGACTACTGCGAGCTGAACGCTATGATTGGCTACAAGAGCATCGTGGCCGACCCTGTGACCTTCAAGTCTCGCTCTAGTTACGTGACCCTGCCCACTCTGCAGGCCTACTACTCCATGCACCTGTTTCTCCAGTTTAAAACCACCTCGCCCGATGGACTGATTCTCTACAACCGAGGAGACGGCAATGACTTCATAGTGGTGGAGCTGGTCAAAGGTTACATGCACTACGTGTCGGACCTGGGGAACGGTGCTCATCTAATCAAAGGCAACTCCAACACGCCCCTCAACGACAACCACTGGCACAACGTCATGATCTCACGAGACACCAACAACCTCCACACCGTCAAGATCGACACCAAGATCACCACCCAGACCACCATGGGTGCTAAGAACCTGGATCTGAAAGGTGACCTGTTTGTTGGAGGGGTGTCTAAGGAGATGTATAAGGACCTGCCTAAGCTGGTGCATTCGAAAGAGGGCTTCCAGGGCTGCCTGGCTTCTGTGGACCTGAACGGCCGATTGCCTGACCTGCTGTCGGACGCGCTGACCACCATGGGTCAGGTGGAGAGGGGCTGTGAAGGTCCAAGCACTACATGTCAGGAGGACTCGTGCTCCAATCAGGGCGTGTGTCTCCAGCAGTGGGAGGGCTTTACCTGTGACTGCAGCATGACGTCGTTTGGAGGACCTCTCTGCAATGATGCAGGAACTACGTACATCTTCGGACGAGACGGCGGGCTGATCGTGTACACTTGGCCACCCAACGACCGGCCGAGCACGCGGGCAGACCGACTGGCTGTAGGATTCAGCACCCAGCAGAAGGACGCAGTGCTGGTCAGAGTGGACAGCTCCTCTGGCCTCGGAGACTACCTGCAACTGCAGATAgagAAAGGCAATATCAGAGTGGTGTTCAATGTGGGCACCGACGACATAAACATTGAAGAGACCTCAAAGTTTGTAAATGATGGAAAGTACCACATAGTTCGCTTTACGCGGAGTGGCGGTAATGCCACCTTGCAGGTGGACGATCTGCCAGTCATAGAACGATACCCCACAGgcAACATTGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGGCTTGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGACAACTCACCATCTTCAACAGCCAGACCACTATAAAGATTGGCGGATGGGAGCGGGGCAGCCGGCCGTTTCAGGGGCAGCTGTCCGGCCTCTACTACAATGGCCTCAAAGTGCTCAACATGGCCGCCGAGGGCGACCCCAACGTACGCGTGGAGGGCAGTGCCCGGCTGGTGGGCGACCTGCCCTCCTCCTCCATCACCCCCCAGTCCAGTGCTTCGGCCACGGGCAACCGCTCGGAAACGTCCCCCTCGCTCACCgacatcaccaccaccaccgcgTCCAATCGGCAGGGCAAGCAGACCACCACGTCACAGGATGATCTGTTGGTAGCCTCCGCTGAATGTCCCAGTGATGATGAGGACATTGACCCATGTGACCCAACCTCAGCACACCCTCCTCTGACCGAGACGAAGGGCTACCCGAGCCCAGAGGTGATCCGGGAGTCCAGCAGCACCACGGGCATGGTGGTGGGCATCGTAGCAGCCGCCGCCCTCTGCATCCTCATCCTGCTCTACGCCATGTACAAGTACCGCAACCGCGACGAGGGCTCGTACCACGTAGACGAGAGTCGCAACTACATCAGCAACTCGGCCACGCAGCCCAACGGCGCCGCCGTCAAAGAGAAGCCCATCGGCGTGGCCAAGATCTCCAGcaagaataaaaagaacaagGACAAAGAGTACTACGTCTGATCCCACAGACATTCTCCCTCCCTGTGTTCAGACACTTACGGGGCAAAGGGGGAGGAGATGCCAACCTGTGTATAgtaattaagagaaaaaaaacacggcCTCAGTTTTAACTGAGACCAAATATACTGTTACTAACAATaagaaaatatactttatactcAAGCACACGAGAACTATACAAAAGCCGGAAGTGTGTACACAAGGAGTTCGGGGCaaagagagtatgtgtgtgtgacttcAGAGTCAATCCTTGGGGAAAAGAACGGAGCCAATGAATGAAACCCTTGATGCGTTTTTGAGGGTGAAGCACTCAAAGACAAGGCCACTCACTGCTCAGAACTGCTGAGCTTCTATTGTGTTTCATATTAtgttgcctgtgtgtgtgtgtgtcgccgGACATCCAGttcctcctcttcatcatctttcagaaaaaaactcaACACGAACATCTGGACCAGTACAAAGTACGAAAAACAAAGTACAGAGACGTTCACTATAAAAGAGATGAAAAGGACCTTATGAAAAAGAGACTTATCACTATGAGAAGCTACCTACTCTACTGTATGATTGTTAAATCAGCCAAAGTATTCGCCcccctgaccccgcccccttTTCTAACGGCAGTGTTGGCCAGTTGGAGACGTATACAAGGTGACAAGGTGACAGTGTGAAGACGATGAGGgggaaaacgaaaaaaaaaaactacaacagTAAAGGATCCAAACTTTTAAActaaaactcaaacaaaaagTCAAACAAATATGGAGGACCAATGCCTTGGTGTCACAGAGGACAATGGAGGCCTTATTAACAATCCAAGTGTACATCTACggttgttttcttttgttcgTATGTCGTACGTCACGACGCTGACGCTGACAGCGACGCTGACGACGACAgtggtgatgctggtgatgctTAAGAACGAACGGTAAAGAATGGTAAAAGCGTAAAAAACCGTGGCCGTTTGGGATAGTTTGAGAAAAACTCCATGCACGTGAAGTATCTTATTACATATGTTTATATACGGTGCAAAGACTATCTATGTGTGCTCTCTGGACTGTGGCTGAAGTGGTGTTTTATAGCCTGTTATATAGATGATGCCAACTACAGTATACCTGCTCTTCAAACATTTTCTAGTAAAATCCGACGGGAAAAcgactaaaaacagaaaaaaaataaatgttaatgtgtTGCTCTAGCGATAGAACCGTTTCTGCCATTAGCTATAAACATTTGGGTTcctgtatttttcattttcctcCTTTTACGTGCATCTTCAATGTCTATCGTTTATTTACGCCATTGTACTTTGATTTCCTTTGCAATTCTTTCTTGTGTGTCGACATACAGAGatgaacaagaacaagaacaagatcAAAAAGTTTGGGTTTGGGAAAGCAaagcaaaccaaaccaaatcaccACAGGGGaagcttttaaaaattatatgaaTTACAATACGAATCGTTCATGAATTGTTGAAGCAATATCCTTTTGCTCTTTTCAGTGACCAAACTAATTATGCATGGTCAATAGGACAAGGCTCTAATAAACAATGGCTCCATAACacctacaacaaaaaaaatatgaaaagagataacaaaaaaaataacgaatAAATAAGTAAACCGAACAAAAGACAATGAACTGGATcccaaaatacagtatatatgtatctGAACATCACGACTGGAAGACGCCAATCTCGGAGACGCCAGAAATTAAAGCGTATTGTTTGTGAACACACTCCTCTTTGCTATCTTGTACTCCACCGAATGTACAAGAGGTACAAAATACAGAACCTTCAGAATAAAAccttttgatttttgttttttgtgttttttatttgtgtacaaTTTTTCTAtgattcttttgtttttattgtgaaAATTCTTTGATGACCTCAAAGTGaagatttattatgaaaaaaaaaatagttttgaaaaatcaaatgactaaataaaatattaattaatactt

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07377 NRXN; neurexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72281 lncRNA downstream 158818 20822899 ~ 20825641 (-) True G53610
TU72269 lncRNA downstream 192962 20791208 ~ 20791497 (-) True G53599
TU72234 lncRNA downstream 228574 20755633 ~ 20755885 (-) True G53573
TU72223 lncRNA downstream 294037 20621569 ~ 20690422 (-) False G53562
TU72224 lncRNA downstream 337950 20620723 ~ 20646509 (-) True G53563
TU72432 lncRNA upstream 44890 21429775 ~ 21430104 (-) True G53733
TU72439 lncRNA upstream 102260 21487145 ~ 21487419 (-) True G53740
TU72447 lncRNA upstream 221894 21606779 ~ 21607090 (-) True G53745
TU72445 lncRNA upstream 221903 21606788 ~ 21607090 (-) False G53745
TU72449 lncRNA upstream 222359 21607244 ~ 21607746 (-) True G53747
XM_007230971.3 mRNA downstream 403855 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 416264 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 428129 20541864 ~ 20556330 (-) True pigf
XM_022670339.1 mRNA downstream 592253 20317213 ~ 20392206 (-) False LOC103047709
XM_022670337.1 mRNA downstream 592258 20316016 ~ 20392201 (-) True LOC103047709
XM_022670348.1 mRNA upstream 270732 21655617 ~ 21669948 (-) False LOC103044518
XM_022670350.1 mRNA upstream 270732 21655617 ~ 21669931 (-) False LOC103044518
XM_022670349.1 mRNA upstream 270732 21655617 ~ 21669786 (-) True LOC103044518
XM_007250120.3 mRNA upstream 445954 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 488604 21873489 ~ 21885441 (-) True narf
TU72277 other downstream 165050 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 196841 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 294037 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 681831 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1134109 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1461791 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1706421 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2956515 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3402309 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 4181389 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile