RNA id: XM_022670350.1


Basic Information

Item Value
RNA id XM_022670350.1
length 1820
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC103044518
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21655617 ~ 21669948 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCGATAGCAGAAGAAGACGCTTGTTTTGACGGCGGGTTTTACTGTTTTGGTTTAACCTGTGGCTGCAGTTCTGATCACAGAGCAGTTGTGAGACACTACTGTGTGTTTAAGGCACATTTTTGTGTCTTTTATTGTCTTAAATCAATGCTTAACTAACGTTATAAATGGATTTTACTGAGCGTTATGAGGATACCTGCTCCACAATAGCCGTTGCAGCCAGACATGGAGACTGCAGGCAGATCCAGAGGCTCCTGAGGAGAGGTTACTCTGTGGATGTAAAGGATAACCGGGGTTGGAACGCTTTACACGAAGCTGCAGCTGCAGGATCTTCGCAGTGTGTTCGCCTTCTCCTCACTGCTGCTGCCAGCTGTGAAAACTATGTCAACTCCTTGACACACAACTCTGAAACACCTCTCTATTTCGCTGCAAAAAATGGACACGTCCAAGTAGTCAACCGACTACTAAAGCGAGGTGCAGATATTAATAAGATGTCCAACGACCTCTCCTGCCCTCTTTTTGCAGCTGTGGATGGTGGCCATATGGAAGTGGTGAAGCTGCTGGTCAGTAAAGGAGCTGAGGTCAATGGAACTCATTCCACCTCTGACTGGTCGTGTCTCCACCAGGCAGTTTACAAGGGTCACACAGAGATTGTGAAGTTCCTGGTGGGCCTGTGTTCGCTAGAGGCTGTGGATGACTATGGGATCACGCCGCTGTTTGTTGCTGCACAGTATGGACGTCATGAGTGTCTACAGGTCCTCGCAAATGCTGGAGCAAATGTAAATTGCCAGGCGAAGGATCTGGCCACCCCTCTCCTTATTGCTGCCCAAGAGGGACATTTATCCTGTGTGGATCTACTTCTGTCTCATAAGGCTGATCCAAACATCTACTGCAACGAAGATCAGTGGCAGCTTCCTATTCATGCTGCAGCCCAGTTTTGCCACCCCAGAATCCTGGAGAAATTGATCCCTGTGACGAGCAGAGAATGCGATCAGGGTAAAGAAAAGGTCAGCCCTGTCTATCTGGCAGTGCTCAGTGGTCAAGCGGACAGTCTTCGGCCGCTGCTCAGAGCAGGCTACAGCCCGGACGCCCAGAACTGCAGGCAGTTTGACTACTGCTGTCCTCTAGAAATGACACTGTGGTGCAACTCTTGGAATTCTGACAGTGAACGCCACCAGAGTCGAGAGATCACTCAGATGCTGCTCGCTGCTGGGGCGCACGTCATGATGCCCACATATGTATTTGCACTTCAGGGAAACGTACCTGAACATCTGCCACTGATCCTGGAGCATGCCGGCCTCCCTAAGGAGGACCATCTGAAAGAGCTGGTCCAGACAGCACTGAAAGAAATGCAGAGTGCCCCCTTTTGGCTCCCGTTGCTGCTTAAAGCAGGCCTGGACCCTACTCTGCTTCTTCAGCATAAAATGCTTGAAGAGGCAGAGACCAGGGTGCTTAATTTCTTGCTGGAGTTTATTAATTGGAAGACTCTGCCCTCCACGATGCTTCAGATTCTCGCTCGCCGTCGAGCCGAGGGAACTTGGACCCCACAGAAGCATTTCGAGAGTGTTCCTGCTCTGACTCATCTGTGTAGACTGGCAGTGCGAGCTGCAGTGGGCAGCGATGCTCTGTCTAAATCCTCCTTTGTTCAGCAGCTGCCTGTTCCGACGCTGCTGCAGGACTACCTCCAGTTCAGCGATATCTCCAGTGCCTACACCTACACGGCCGCCTGACTGACAGTTTGTGCTAATTAAGTTATCTCGCTGGTTCCACTGCAGTATTTTGTACATAGctttaataaaactttaatagCCATCTTGTGAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72462 lncRNA downstream 1922 21653436 ~ 21653695 (-) True G53757
TU72459 lncRNA downstream 14089 21640367 ~ 21641528 (-) True G53754
TU72453 lncRNA downstream 18451 21635122 ~ 21637166 (-) True G53751
TU72584 lncRNA upstream 69518 21739449 ~ 21744033 (-) True G53838
TU72599 lncRNA upstream 122637 21792568 ~ 21798437 (-) True G53850
TU72605 lncRNA upstream 128528 21798459 ~ 21808456 (-) False G53851
TU72606 lncRNA upstream 128528 21798459 ~ 21807133 (-) True G53851
TU72607 lncRNA upstream 128528 21798459 ~ 21807133 (-) False G53851
XM_022670347.1 mRNA downstream 270732 20984459 ~ 21384885 (-) True LOC103027095
XM_007230971.3 mRNA downstream 1075013 20572412 ~ 20580604 (-) True LOC103043231
XM_022670343.1 mRNA downstream 1087422 20562271 ~ 20568195 (-) True LOC103047390
XM_007230972.3 mRNA downstream 1099287 20541864 ~ 20556330 (-) True pigf
XM_022670340.1 mRNA downstream 1263422 20342910 ~ 20392195 (-) False LOC103047709
XM_007250120.3 mRNA upstream 160908 21830839 ~ 21870274 (-) True LOC103047279
XM_007250121.3 mRNA upstream 203558 21873489 ~ 21885441 (-) True narf
XM_007250125.3 mRNA upstream 249598 21919529 ~ 21921617 (-) True ddit4
XM_007250124.3 mRNA upstream 263338 21933269 ~ 21938448 (-) True anapc16
XM_007250129.3 mRNA upstream 376565 22046496 ~ 22054088 (-) True LOC103023380
TU72277 other downstream 836208 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 867999 20783738 ~ 20787618 (-) True G53598
TU72221 other downstream 965195 20681811 ~ 20690422 (-) True G53562
trnai-uau_7 other downstream 1352989 20302535 ~ 20302628 (-) True trnai-uau_7
TU71983 other downstream 1805267 19849950 ~ 19850350 (-) True G53382
XR_002650112.1 other upstream 1176745 22846676 ~ 22847337 (-) True LOC111192727
TU72809 other upstream 1421375 23091306 ~ 23091975 (-) True G53996
TU73059 other upstream 2671469 24341400 ~ 24351936 (-) True G54205
XR_002650051.1 other upstream 3117263 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 3896343 25566274 ~ 25566346 (-) True trnak-uuu

Expression Profile