RNA id: XM_022670368.1


Basic Information

Item Value
RNA id XM_022670368.1
length 5728
RNA type mRNA
GC content 0.48
exon number 8
gene id zeb1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24494315 ~ 24607305 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCAgcgtttacacacacacacgcgcacacacacactcagcgaAAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCGCGGCGCACGAGCGTGAGTAACTACAGCCATGTACTGGAAGGACAGTCAGACTCAGACGATGAGGATAAGCTTCACATCGTGGAGGAGGAGGGAAGCCCCCTGGATGGAGCTGATGGAGACAGTGTCGCCCACGATGACGAGCCCAACGGCCCAGAGGACAGATGGGATGAAGTGAAAGACGAGTGTGTGTCAGAAGAGGATGAGAGGAGTCGAGATGCTCTGGTTGAGAAGATCCTTCAACAAGGAGACACAGCGGTCATTTTTCCAGAAGCACCAGAAGACGAACCGCGACAGGGCACACCAGAGACCAGCGGCCACGACGAGAACGgcaCCCCAGATGCTTTCTCGCAGCTCCTCACATGTCCGTACTGCTCTCGCGGCTACAAGCGCTACACCTCCCTGAAGGAGCACATCAAGTACAGGCACGAGAAGAGCGAGGACAACTTCAGCTGCTCCCTCTGCAGCTACACCTTCGCCTACCGCACACAGCTCGACCGACACATGAGCGCACACAAAACAGACCGAGACCAGCGGCATGTAAACCAAACAGGGGGTGGAGGAAATCGTAAGTTTAAGTGCACTGAATGTGACAAAGCCTTCAAATACAAACACCACCTGAAAGAACACCTGCGAATCCATAGCGGAGAGAAGCCATACGAGTGCTCGAACTGTAAGAAGCGTTTCTCCCATTCCGGCTCCTACAGCTCCCACATCAGCAGCAAGAAATGCATCGGCCTCATCTCCGTCAACGGCCGGCCGCGGCCTTCTCCGGCCACAGGAGGCGCCAAAACCCCTCAGTGCCCTTCCCCATCCCTGCCCTCATCTCCTGCCACCGCCCGTACCCAGCTCAGAGACAAACTGGAGCACGCTAAGCCCCTGCAGGAGCAGCTCCCGCTCACACAGATCAAGTCTGAGCCCATGGACTATGAGTACAAGCCTGTGGTTGTGGCCCCGGCTGCTGGGGGCGTGAACGGAGTTTTCCAGGGCGGAGCTGCGGCCCCCCTTCAGGGAGCAGTACAAGCTGTGGTTCTGCCTACTGTGGGCCTGGTCTCACCTATCAGCATCAACCTGGGTGACCTGCAGAACATGCTGAAGGTGGCAGTGGACGGGAACGTGATCAGGCAGGTGCTGGAGAACGCCCAGACCAAAGGCCAGCCTGCAGGAACTGGGAGAGTGGCAATCGCCCAGGCTCCTCAGCAAGTTATCCAAGCCATTAGTCTTCCTATTGTAGACCAGGATGGAACGGCCAAAATCATCATCAACTACAGCTTGGATCCATCGCAGGCCCAGGCAGCCCTGCAGAACTTGAAGAAAGAGCCTATTGGTCAGAACACTGACGCCTGCAAGACAGAGAGACTGCCAGAGGACCTGACCATCAAAAGCAAGACAAGCAAAGAGAAGCCTACTATTACTACGGGTGAAGAGAAGCAGCTGGAGAAGTCTGTCAGTGATGTATCACCCAAACACTGTGGCAAGGAAGGACAGCAGATCAACGGGATGCACCCGGAGGAGAAGTCTGAAGTAGATATTGGACTATGTCCTGGGAAGCCTCCACTGAAGAACCTTCTGTCCCTACTCAAGGCTTACTTTGCATTAAATGCTGAGCCCACCAAGGAGGAACTGGCCAAAATCTCTGAATCAGTCAGCCTTCCTACCGAAGTGGTCAGAAAGTGGTTTGAGAAGATGCAATCCGGTCAGATTTCTGTGGAAATGTCTTCTCCATTGTCGCAGAATGAGCAGAATGCTGGTGAAGATACTGATGAAACACCAGAAGAGCTCATCAAGTTGACACTTGAGAACGACAAAGAACCCCAGAAGAACCTAGAAGAGCAGGAGATGGAACTGCATAGCCCTGCAGAGGGCGCTACAGCTGGGATAAATGGGACAGAAAATGGCCCAGCATCCCCTTCACCACTGAACCTGTCTGCAGACGGGCCCGTCCCAGCCCGGACTGCAGAGGAGGGTGATGGACCCCTCGATTTGTCCCTCCCCAAATCCGCCGCTGCACCTAATGCGGCTACCACTCACGCTAACACTGTTTACTCGGCTCAGGACGAGCCACTGAACTTGACTTGCACAAAGAAGGAAGCGTCCGGCATCGCAAACGCTAGCGCTGCCGGCTATGCTAACCAAACAAGTGCCAATCCCATAAACATTGTGACCACTCAGCTGCCCACACTGGTGGCCATCACCGATCAGGGCCACGGGCAGTGCCTACGCGCCCTCACCACCACTAAACAGACCATCCTGATTCCACAGCTGGCCTACACCTATACCACTACAGCCTCCAGCCCAGCAGGGGGCGACACACAGCAGAAGACCATACTGCGGGTCAACGGAATCAAGGAGGAAAAGCTGGAGAACACCTCAGAACTGGCTTCAGTTTTAGATGAGCAGACAGACTCAGACTCCGGCCCAGCgaggaagaagatgaagaagactGAGAACGGCCTGTACGCCTGCGACCTGTGTGACAAGATCTTCCAGAAGAGCAGCTCGCTGCTTCGACATAAATACGAACACACAGGTAAACGGCCCCACGAATGTGGAATCTGCAGCAAAGCTTTCAAACACAAGCACCATCTGATCGAGCACTTGCGTCTGCACTCAGGAGAAAAGCCATACCAGTGCGATAAGTGCGGCAAACGCTTCTCCCACTCAGGCTCCTACTCGCAGCACATGAACCACCGCTACTCCTACTGCAAGAAAGAGAACCTCGGCCAGGACCTTCTGCAGAGCCCCGAGGAGGAGGAGAACCAGAGCGAGGAGCAGCCTCGACCCGAGAGCACCGCGCCCTCGCCTCCGTCACAACTGGACTCAGACGAGCGAGGGAGCAGCGCCAGGGAGGACGAGGAgagcgaggaggaggaggaggagatgggCTCTGGCAGCATGGTGGACGAGGACGAGATCCAGGTGGTCCAGATCGGAGAggagggaggagaagaggaggatgaggatgaggaggaggagaggatggaggaagaggagatGACCACGACACAGaatggaggagaggaagagacagtggTGGAAACACtagtagaagaagaaggaggaggaggaggagaagaagaagaagaggatggagagatgatGAAGGTTGTGGTGATGCAGGACTgcgaggaagaggaagaggaggaggagcaggacgAACACGACCGAGAAAGAGCAAAAGCAGAGGAACAAGCAGAAAACGCAGAACCAATGGACACGCAGGAGAACAAGGACGAGACACAGGAACAAACTGAGGCTGATGAGGCCGGAGAGAGGAACGAAGGCGATGAACGAGGAGGAGAAGAACTTGTGAAGGTGAACGGTGCAAATGAAGGAAACACACCCAGTAAAAACGAGATgtgaaatgaacagaaaaataaaagaacacagcTGGGCTTTTGTTGCCCTGATCCTTTGCTACATCGTTTTACAGACGTTACTAATTTGAAGGAAACAAAGACTGCAGATGTGTCTCTTTCAGAGAGTTCAGACTGACTGTGCAGTAATGAAGacagaagaaggaggaggaggaggaagaggaggagagagaggaggaggagcgcTGGAGCGCTGACGCTGCATTTTAGCCCACTACTGTGTATAAAACCCCCTGGTGTGCctgattaagaaaaaaaaagaaaaacaaaacaaactagtTGCTTTTCCACAAAACCAGTGTTTATGAATATggtttgtataaatataaagtttaacaaacgtaaaaaaaaaaattgacgcATATACGGACTGAAAGCTAGACACGTTTTagctaataatattttattactaaaacACCTTGGGTCAATTTCTTTTTATCAGTGTTACTAATTTTTTGTCACTCTTGTTTAAACCTTAAGAAGTTGTACAGTTGGGAGAGATTTCTATACGTTTTTATTGCCAATGAACAAAACTcagtattttattgcatttgaaggagaagaaaaaaaaaatcctgtgcACTACCATACTCCCAGTTTACCGATGGATCACCTCTGTGGGCCTTGCGTTGTTTAATGTCTACCTTTCAGTATTAGCACTCTGTTAGAGCTAACCCCTATGCCACGCTAGCCGGCGCTAGCCCCACATTTACCTGtctgatttactttttttgtgtggtaaaGAAGTGGTCTATGAGccttaaatgtaagaaacaagctaacaaaaaaaaaaaaacgatttacaCGGGTTTGATGGGATGGCAGGATGGTGGCAAACCATCCGAAATCATCTGAAAACTAAACGTTTCTGAGAAGCAGTATTATttctgagaaagagaaaaagcaaagtcaaaaatgtcaaaaattcACTCCTCAGTCTGAGACCGCCCACTCTCCGTTATGCAAAAGCATGCATGTTGAAGTGCCATTCGACAGTGCTCTCGCCGTTCCCGGACACTGTTACCAGGCAGCATGTTGACCTGTGAGCTGGCGCTGTCTTTAACgttttattaataatgtggtagcaaacctaaccttaaacctGAACCcctgaacctaaacctaaaccactAGTCCTGACCAAAGGACAAGACTGCCTCTTTTTTCTAAACTCAGTTCATCCCACCTGTCACTGCAGTTCAGGACAAAACAATCAAAAacgagaacaaaaaaaagaaaagtttggtTTCTTTCGTTTCAGCCTTGAAGTGTTTGTTTGATCTTTTTTGTTCCTCTGTTTGTTTGGTGCACTTCTTTATCCCATTGGCTGCACATACACTTTTTCTTCAGGTAACAACCATAAGCAAATATGAACCCGTAATGACCCTCACCTGacattggttttgtttttttatttctacttttaTAACAGTCAGTATTAATTTCTGTCTATtctgtttgtttgattgtttgtttgttggtttgtttgtttgtttttaagtgaacattgtgtattgtttgtttgcagtcaTGGCAGTATTATTCTTCACCCCCTTCACCAGTATAACTTTGTTTAGTTTTAGAGAccttttatatttatgtgtcttatttttgtatttttctttatggTTATTTATTACACGACGTAGTGTACAATATTGTAGTTTgtattaatacaataatatattttagtatgaAGAATAATTTCGAAGATAAATGAATGCAAAGCTGGGGAAGAACCTCTAGCATTTcaaagtgttttaaaacagAAAGAGTATTATTTTCAATTGTTTGAAAgaattaaaaaagtgaaataaaatgtaaaaaaaaaaagaaagaaagaaagaacgaaaGACAGACCACCCAATGAAGTATTGGACCTTTATCTTCTCGCGTTGCCCATTCTCATGTTACTGTGTCTTTCCCCACTAGACCTCGAGGCTACTGAACATTGATAAACTAATTGTATGCTATACACGCATGAGTCTTCGCTGTTGTACTGAAGGATCATCCTTAACCACGATACTGTGCTGCCCTTTTTACGAAAAGCCAAAATGTCGTTAACGTCaacttttgtttgattttgtgcCAATGTGTTCGTTTGTCCACGTCAAGGCCACAACTTGTTTTATATGTCCCTGTTTTAATCTAtggttctgtattttttttatagatagttttttttttttttttttttttttttttttttttttttttttatgactccCCATCtcacaataaaatacatcaaGAATTGAA

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09299 ZEB1; zinc finger homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73083 lncRNA downstream 1345 24492701 ~ 24492970 (-) True G54227
TU73080 lncRNA downstream 31183 24459779 ~ 24463132 (-) True G54224
TU73057 lncRNA downstream 142379 24345126 ~ 24351936 (-) False G54205
TU73056 lncRNA downstream 153490 24340011 ~ 24340825 (-) True G54204
TU73054 lncRNA downstream 162245 24331608 ~ 24332070 (-) True G54202
XR_002650050.1 lncRNA upstream 8740 24616045 ~ 24637375 (-) True LOC111192640
TU73097 lncRNA upstream 110176 24717481 ~ 24718187 (-) True G54237
TU73098 lncRNA upstream 118492 24725797 ~ 24726344 (-) True G54238
TU73099 lncRNA upstream 132531 24739836 ~ 24740055 (-) True G54239
TU73174 lncRNA upstream 203515 24810820 ~ 24812627 (-) True G54276
XM_007250130.3 mRNA downstream 2429312 22056973 ~ 22065003 (-) True LOC103023701
XM_007250129.3 mRNA downstream 2440227 22046496 ~ 22054088 (-) True LOC103023380
XM_022670358.1 mRNA downstream 2440412 22046496 ~ 22053903 (-) False LOC103023380
XM_007250124.3 mRNA downstream 2555867 21933269 ~ 21938448 (-) True anapc16
XM_007250125.3 mRNA downstream 2572698 21919529 ~ 21921617 (-) True ddit4
XM_022670382.1 mRNA upstream 178946 24786251 ~ 24920590 (-) False svil
XM_022670372.1 mRNA upstream 178946 24786251 ~ 24902417 (-) False svil
XM_022670376.1 mRNA upstream 178946 24786251 ~ 24878021 (-) False svil
XM_022670375.1 mRNA upstream 178946 24786251 ~ 24878021 (-) False svil
XM_022670380.1 mRNA upstream 178946 24786251 ~ 24878021 (-) False svil
TU73059 other downstream 142379 24341400 ~ 24351936 (-) True G54205
TU72809 other downstream 1402340 23091306 ~ 23091975 (-) True G53996
XR_002650112.1 other downstream 1646978 22846676 ~ 22847337 (-) True LOC111192727
TU72277 other downstream 3674906 20817839 ~ 20819409 (-) True G53607
TU72268 other downstream 3706697 20783738 ~ 20787618 (-) True G53598
XR_002650051.1 other upstream 179889 24787194 ~ 24878022 (-) False svil
trnak-uuu other upstream 958969 25566274 ~ 25566346 (-) True trnak-uuu
trnak-uuu_1 other upstream 959836 25567141 ~ 25567213 (-) True trnak-uuu_1
trnak-uuu_2 other upstream 960088 25567393 ~ 25567465 (-) True trnak-uuu_2
trnak-uuu_3 other upstream 960340 25567645 ~ 25567717 (-) True trnak-uuu_3

Expression Profile