RNA id: XM_022670430.1


Basic Information

Item Value
RNA id XM_022670430.1
length 6514
RNA type mRNA
GC content 0.51
exon number 40
gene id LOC103030651
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27507703 ~ 27588964 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggagagagagagagagaaaaagagagggagagagagaaagagagagtggacaagtgtgagtgtgtgtgcgtgagagagGCATTCACAAGCGTGATTTGCTGCTCTACTCTGGAATGCAGTTTGTGCCTGCCTCTCTCCTCCTCAGCTCTGGCAGCGTTtccttcttcatcttcttcaacAGCTCCAGTCTGAAGGATGATTCCTACCAAAGCGTCCAACCAAAGTAGCCCATCTTCCTGCTCATGGATGGTTAAGAAGACCCATCACCCTTGGGCTTCTGTCCAGAGGACCTGCCCCATCTAAAGCAGAGAACCCAGGCAGAGGTAAGAGGGCAAGAGCTTCAGACCTCGTCTTTCAGAGCAAGAGCAAGAGCACAGCGCGATAAAAAAGACCTTCACAGCTTAAGCCTCTAAACAGCGGCAGCATCCTGAGATAAATCTGAAGGATGGAGCAGGAGATCTCTAAAGTGCAGAGGAAGATGTCTGACCTGGAGTCAGTTCTTGAGCAGAAGGACGTAGAGCTAAAAGCTTCTGAGACCCAGAGAACCATCCTGGAGCAGGACCTGGCCACCTACATCACAGAGTGCAGTagTCTTAAGCGCAGTCTGGAGCAGGCTCGTATGGAGGTGTCGCAGGAGGATGATAAGGCTCTACAGTTACTTCATGATATCCGTGAGCAGAGCAACAAACTGCAGGAGATTAAAGAGCAGGAATACCATGCCCAGCTGGAGGAGATGCGGGTGTCCATTCGCCAACTGGAGGAGAACCTCTCTGCTGCTCGCCGCCGTAGTGATCTGTACGAGTCTGAGCTGAAGGAGTCACGCCAGACCAGCGAGGACTTGAAGAGGAAGGCAGCAGATTACCAACAGAAGATCCAAAAGGCCAAAGAGCAAGGCAAGGTTGAGATGGAGGAACTCCTTACCAAACTACAGAAGACCAATGAAGAGCAGCAAACAAAGATTGATGAGCTTCAGGACAAGCTTTCCAAGGCAGTGAAGGCGAGCACAGAGGCCACAGAGCTGCTGCAGAATGTTCGCCTGGCTAAAGAGCGCCTTGAGCGAGATCTGGAGCGTCTGCAGACGAGAGAGGACTCCACCGACAGTCTGCGTAGACGTCTGCGTGAGACCGAGGATGGCAGGAAGACACTGGAGAACCAGGTGAAAAGGCTAGAGATCGTGGAGCGCAGGGAGACCAAACTGAAGGAAGACATCCagaccaaatcacagcagatCCAACAGATGGCAGATAAGATCATGGAACTGGAGGAGAGCTTCCGTGACAGTCAAGCCACAGCGCAGCGCATGGAGACTCATCTGGAGCAGAATGAAATTCTGTATGAGGATAAGATCAAGGTTCTGGAGAACCAGATGAAAGCAGATATGGCTAACAAAGACGCCCTGGAATCTAAGCAGAACATGTATGAGGAAGAATCTCGAGAGAAAGGAAAACTAATCAGTGAACAGACGGCGACAATCAATGCTATGGAATCAAAGATGACCAGCTTGGAGCAGAGGATCGCTGAGCTCTCTGAGGCGAACAAGCTGGCAGCCAATAGCAGTATCTACACTCAGAAGAACATGAAAGCCCAAGAGGAAATGATATCTGAACTGAGGCAGCAGAAGTTCTACCTGGAGTCTCAGGCTGGCAAACTAGAGGCCCAGAACGCCAAGCTAGAGGAGCACCTGGAGAAGATGAGTCAGCAAGAACAAGCCAATAAGAGTCGTGTGCTAGAGCTGGAGGCCAGACTCAGAGAGATTGGTCTGGAGCACGAGGAGCAGAAGCTGGAGATAAAGCGGCAGGTGTCGGAGCTGACGCTGTCACTACAGGAGAGGGAGTCGCAGATCAGTAGCCTTCAGGCAGCGCGCCATGCACTGGAGAGCCAGCTGCAGCAGGCCAAGACCGAGCTGGAGGAGACCACCGCAGAGGCTGAGGAGGAGATTACTGTCCTCCGAgCCCACCGGGACGAAATCCAGCGAAAGTTTGATGCCCTGAGGGACAGCTGTGCGGTGATCACAGACCTGGAGGAGCAGTTGACTACACTAACGCAGGAGAATGCTGAGCTCAACAGGCAAAACTTCTACCTGTCCAAGCAGTTAGATGAGGCCACTGACGAGAACGAGGAGAGGCTACAGCTCAGCCAGGAGGTGGACCGCCTTCGCAGGGAAGTGGCTGACCGAGAGATGCACCTCAACAACCAGAAACAGaacATAGAAACCCTGAAGACGACGTGCACCATGTTGGAggagcaggtgctggagctggagactCTGAATGATGAGCTGCTGGAGAAGGAGAGGCAGTGGGAGAGCTGGAGGAGTGctctggaggaggagaagaaccaGGCCGAGCGCAGATCCAGAGATATACAGAGACAGCTGGACAATGAGAAACAGAACAGGCTGCGTGCTGATCAGCGAACTTCAGAGTCTCGTCAGGCCGTTGAGCTGGCGGTGAAGGAGCACAAGGCTGAGATCCTGGTGCTACAGCAGGCTTTGAAGGATCAGAAACTGAAAGCTGAAGGCCTCTCTGACACGCTAAGTGATCTGGAGAAGAAGCATGCCATGCTGGAGATGAATGCTCGCAGTCTGCAGCAGAAACTGGAGACCGAGCGGGATCTTAAACAGAGGCTGGTGGACGAGCAAGCAAAgttgcagcagcagctggaCATGCAGAAGAGCCACATTTTCAGACTGACGCAAGGTTTGCAGGACGCATTGGATCAGACTGATCTACTGAAGACTGAGAGAACAGACCTGGAGTATCAGCTGGAAAACATACAGGCGGTGTACTCTCACGAGAAAGTGAAGATGGAGGGCACCATCACGCAGCAGACCAAGCTAATAGACTTCCTGCAGGCCAAGGTAGACCACCCCTCTAAGAAGAAAAAGGGCATCTTCAGTGGCAGGCGTCGGGAGGACCTGTTGGCAGCGTTGGCTGCCCAGGGCCAGACTCAAGTGCCCACTGTGCCTGTCGTGACCCCTGTGCCCCTACAGTATAGTGATATGAAGGCGGCACTGGATAAAGAACGTGCTCGCTCTTCTGAACTGGAGGAGGCCCTGCAAAAGACACGCATGGAGCTCAGAGAGGCCATGCAGTTTAATAAAGCCCTAGAACATGGTGGCACTCCTGCCACCCCGGGTCTGGCCCGGCAGCAGCTCATGATGTCTACCAAATCCAACAAATCCCCCGAGCATCAGCCCAACCCACCTAACCTGCCCTCCTCCAACGTCAGCCGCCGAAAGGAGACCAACAACCCTGATGAAATAAGGAGAGCCACTTCTGAAAAGTATGCACGACGTGTGAAGGAAAGACTCCATCACAGTACCCACGGTACCCACAACACCCCTCACCGCTTCACCCAGGGGCTCAACATGAGGGCGGCCAAATGCACCGTGTGTTTGGACATCGTCCACTTTGGCCGACAGGCTGCTACCTGTATTGAATGTCATGCTTTGTGCCACCCAAAATGCTCCCCCTACCTGCCAGCTACATGCGGTGTGCCCACTGAGTATGCCCTGCACCTGTCTGAGGCTCTGAGTAGAGAAAAGGGCAGTTCCTCTGGCCTCAAAGACTCCAGTGGACACATGAGACTGGAGGGCTGGATGAAGCAGCCCAGGAATGCAAAGCGTGGGCAGGGATGGGAGAGGAAATACGTGGTGCTGGAAGGGAATAAAGTTCTCACCTATGAGGCCGAGCCCAGAGAAGAGTCAGTGAAACCTGTGGACGAGCTTGACCTTTGTCTTTCGGACGGGGAGATGATTGTGCACAGCGCTGTGGGCGGCTCGGAGCTGACCAACACAAGCAAATCCGATGTGCCGTTCGTTCTGAAGCTAGAGTCTGTCCCCCATGCGTCATGCTGGCCAGCGCAGACTCTGTACCTCATGTGCTCAGGCTTTCCAGAGAAGCAGCGCTGGGTGGCTGTGTTGGAGGCCATCGTGGCCAGTGCCCGAGGAGCCCGCGAGAAAGCAGAGGCCGATGCAAAGTTGCTGGGTAATTCTCTGCTCAAACTGGAGGGAGACGACAGACTGGACATCAACTGCACTCTCCCCCTCACTGACCAGATTGTGTTGGTGGGTTCAGAGGAGGGTCTGTATGCTTTGAACGTCATTAAGAACTCGCTGACTCACATCCCAGGCCTTGGTTCTGTGTTCCAAATCCACATCATCAAAGAGCAGGACAAGCTGCTGATGATAGTGGGGGACGAAAGGGCACTATGTCTGGTGGAGATCAAGAAAGTGAAACAGTCGCTGGCCCAGTCCCACCTCCCAACCCTGCCTGAAATTGTGCCGTACATCTTTGAGACTGTCAAGGGCTGTCACCTTTTCGCCGCAGGCAGGATCGAAAATAACTCCTGCATTTGTGCAGCGATGCCCAATAAGGTCACAATCCTGCGCTATAACGACAATTTAAGCAAGTTCTGCATCCGCAAGgAGATTGAAACCCTGGAGCCATGTAGCTGTATTCACTTCACCAGCTACAGCATCATCATCGGCACCAACAAGTTCTATGAGATTGAGATGAAGCAATATGTGCTGGAGGAGTTCCTGGATAAGAATGACGTGTCTCTGGCTTCTGCTATGTTAACCACATCCTCCTACAGCTTCCCCATCGCCATCATGCAGGTGTCCAGCACCCCTCAGAAAGAGGAGTACCTGCTCTGCTTCCACGAGTTTGGAGTGTTTGTGGATGCTTATGGCCGCAGAAGCCGCTCAGATGAACTCAGATGGAGTCGTCTTCCTCTGACTTTTGCCTTTAGAGAGCCATACCTGTTTGTGACCTACTTCAACTCGCTGGACGTTATTGAGCTTCAGGGACATGCTGCTCTTGGGCCTCCTGCGCTTGCTCACCTGGACATCCCTAACCCACGCTTCCTGGGCCCAGCCATCTCATCAGGTGCCATCTACCTTGCCTCCTCCTACCAGAATAAGCTAAGGGTGATCTGCTGCAAGGGTCACCTGGTGCGGGAGTCGGGCGAGCTGCAGCGGACAGGCTCCAGCAGGAGCAGCCCAAGCAAATGCGGCCCACCAACTTACAACGAACACATCTCAAAGCGGCTGGCCTCGGGACCCGGGTCTCAAGACGGTGGTCTACACCGCGAGCCCAGCACGCCGCACCGTTACCGGGAGGGTCGCACAGAGTTCCGCAGAGACAAGTCCCCCGCCAGGCCGCTGGACAGAGAGAAGTCTCCGGGCCGTGCCGTGCTGGACAGCCGCAGGGAGAGGTCGCCGGGGCGGGCGTTTGACGAAcgtgagagagacagggagcgATCACGCCTGCACAATAGCTCAGTTCGCACCCAACTCACACCCGTCAACAAGGTGTGGGACCAGTCTTCAGTGTGAGAGCGCCCCGGCCAGCTGGAGTAAGAGCCATCGTCCACTCCCAGCATGGATGGACATGCCACTTTACAGGCATCTCTTTAAACACAGCTATTCCATCATCCCATTGCCTGTAATGTGAGCAAGAACCatgttgtaattttttgtaaCTTAGCTGTTGTCCAAATATACTTGCACCTAGACGTTTTGCTCACATACTTGCATACAATGCCGGTTTACAAACGATGAAGGCCCCTGGTTTGTGAAAGACTGTAAACAATAGAACACACAATAGTTGTGAATCCCGTAACTATAGAAAAATAAGCTGAATGCACACCACAtcattactgtaaatatattgaTTCCAACTTttctagttaaaaaaaaaaaggtacaataGTTGAATGACAAAGCCAGgtctattttttatgaaaaaatgtgtttgtatagAGTTCAAACTAAAGGTTTCCTACAGACAAAGCTGATGTTTTCACATTATCACAGTTATATAACAGTTATCACAGTTTAAGCTTGCTGCTTTTTCAAAACTGTCCATCAGCTTTTTGGAGGGGCAGTTTTGCAAGAGCCTGACAGCAGATGTAACCGAACTGCACACTGCATATACTGATGCTAATGTAACTCTTTAAGCTTCTAGAACTTTTTGAAAAAGAGACAGGTCATGTTCTCGCTACAAGTGTCCTTGTGCTGTTGCAGTAATCGTATAGCATTTTGTTGAAACAGTATAAACGAACGATCATATTAGCTTTTACTGACACACTGTTGACTGACTCCAAGAAGTCTACTGGGCTCTTCTGGAAACCTTTTCGCTGCTTAGTGTACAGACGTCCTGTTCTGCTGTATGGTGAAATTAACGTCCAGTAGCCCTCAGGGTTTGTATAAGAACTATTACTGATTACTGCTTCCTTATTGTGTAGGATCACAAGCACAGCCACAGTATAGCTCCCTATGCTCCCTcaccttgtttatttttatttatttatttatttatttatttttgtcatcaCAGATTTTAAGCAAATACTTGAGTGTTCACATCAAACGCATGAGTACCTTCTTCCTCAATTTTGGGAAGCCGTGTCATGTATCCACTTGATATGGATTGTTATAcatattgatgttttttttccttctttttttgtaaatctgTTAAAGTACATTAAACACTATAACGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73949 lncRNA downstream 1831 27147415 ~ 27505872 (-) True G54846
XR_002650060.1 lncRNA downstream 94766 27411234 ~ 27412937 (-) True LOC111192649
TU73981 lncRNA downstream 262605 27243080 ~ 27245098 (-) True G54869
TU73763 lncRNA downstream 447252 27058737 ~ 27060451 (-) True G54716
TU73745 lncRNA downstream 533611 26973568 ~ 26974092 (-) True G54702
XR_002650061.1 lncRNA upstream 73364 27662326 ~ 27663868 (-) True LOC111192650
TU74040 lncRNA upstream 123510 27712472 ~ 27714921 (-) False G54916
TU74039 lncRNA upstream 125083 27714045 ~ 27714921 (-) True G54916
TU74047 lncRNA upstream 130691 27719653 ~ 27720578 (-) True G54920
TU74095 lncRNA upstream 173666 27762628 ~ 27767606 (-) True G54954
XM_022670422.1 mRNA downstream 247903 27240990 ~ 27259800 (-) True LOC103044021
XM_007247185.3 mRNA downstream 258094 27240990 ~ 27249609 (-) False LOC103044021
XM_007247186.3 mRNA downstream 271542 27222840 ~ 27236161 (-) True LOC103044306
XM_022670415.1 mRNA downstream 296670 27207308 ~ 27211033 (-) False srrd
XM_007247187.3 mRNA downstream 296672 27207308 ~ 27211031 (-) True srrd
XM_022670437.1 mRNA upstream 15909 27604871 ~ 27659305 (-) True LOC103030338
XM_022670440.1 mRNA upstream 142777 27731739 ~ 27755834 (-) True epgn
XM_007247179.3 mRNA upstream 145882 27734844 ~ 27753958 (-) False LOC103042060
XM_007247178.3 mRNA upstream 148286 27737248 ~ 27753958 (-) True LOC103042060
XM_015605282.2 mRNA upstream 403500 27992462 ~ 27996332 (-) True LOC103029383
TU73985 other downstream 34356 27469218 ~ 27473347 (-) True G54873
TU73957 other downstream 339193 27166686 ~ 27168510 (-) True G54854
TU73608 other downstream 931960 26573400 ~ 26575743 (-) True ccl28
TU73603 other downstream 937772 26558406 ~ 26569931 (-) True LOC103042298
trnak-uuu_38 other downstream 1911706 25595925 ~ 25595997 (-) True trnak-uuu_38
TU74086 other upstream 139749 27728711 ~ 27731079 (-) True G54947
TU74195 other upstream 564459 28153421 ~ 28157449 (-) True G55023
TU74384 other upstream 828771 28417733 ~ 28423955 (-) True LOC111192657
TU74381 other upstream 1009316 28598278 ~ 28600510 (-) False LOC103031600
TU75652 other upstream 5192314 32781276 ~ 32802153 (-) False LOC103021360

Expression Profile