RNA id: XM_022670896.1


Basic Information

Item Value
RNA id XM_022670896.1
length 3270
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC111192707
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19122620 ~ 19143280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCTGATGCTGATGGCGCCTCGCGGTGCACGAGGCGCTCACGAGGAAGGAAGGGAGATCAGTCCGGATCAGACTgacatcatcatcctcatcagtCCGGTGCTGCTCATTCCCGCTGGAgtggtgctgatgctgatgatggAGATGCTGATGGAGGAGGATGACAGGAGGTGCTGGTGGTTTGGCGatAGTCAAGGAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAAAATCTGAGGCTGTTCCTGCACAAGAAGCTTCTAACAGTGTCATAGTGCCTGCCCTGCCTCCTGTTATAGAGATGGAACCGaacattacTGAGAGAACAAATCTGGTCACAACCAGCCCAATCCTGGCCAAGAAGGACCAGCAACAGTCTCAGCCGCAAAATTTACAGGCTCTAAGTAAAGGAGAAGAGATAGTCAATGAAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAATATCTGAGGCTGTTCCTGCACAAGAAGCTTCTAACAGTGTCATAGTGCCTGCCCTGCCTCCTGTTATAGAGATGGAACCGAACATTACTGAGCGAACAAATCTGGTCACAACCAGCCCAATCCTGGCCAAGAAGGACCAGCAACAGTCTCAGCCGCAAAATTTACAGGCTCTAAGTAAAGGAGAAGAGATAGTCAATGAAAGAGACCAACTGCATCCCCAAGAGCAGACGTCCAACACAATATCTGAGgacTGTCAACATAAGATAGTCATTGCAACTGTTTCAAGCATGAACAAATGTGTCGCATGTGATGGACCTTTTGCATCACTCAAATGGATTGGTCTAAAGTGTAAAGTCTGCTCTTGTTTCTGGCACAAAACCTGCTttacaaaaatggaaaagaatGTCCAAGACTCAGTGTCATGGGTATGTATATTCCGTGTTTTTTAAGAGTTGCCATTTATTGCCAAGTGTTACATAGTAATGTTCTATTTTCTGGTATCAGGGAGAAAGGGATTCAAGTTCAGATGAGGATAAATCAGATGAAGAGTATGTGCCAGAGACAGACAACTCAGACAGTGAATCAGACAGTGCAGTGGAGTCTCCAATAGAATGGCCAAACAAAATCCAAGTCAATAAGCAAAATGTGAAAGCTGTCCACTCCAACTTCACCAAATCTGGCAGTTTGAAGttagaccaaaaaaataaatgcagtggAAAACAGAGTGAAAAGTCGATGGAAAGTGTTTCTCTAGACAAAGAAGCTGATTTATTTTGCTATGAGGAGCAGGTTTCAGGTGTAGAATCGCATGGTGAATCAGACAGTTCTACAGAATTAGAAGATACACTTTCAAATAAAGATCAGATTGAGCTTCTTTCTAATTGCAAACTGTCCTCAGAAGCTGCAGCTTCAGGCAGGAGACCAAACAGCTTGGGTTTAAGGTTAATAACTACAACAGAACCAGTGGACACTCACAAGAGTGAGTGTGAAGATTTTCCAGATGCATCACTGACAGGACAAGGGGGTTCAACAGCTGTTGCTGATTGTCTTCAGTCATCTGAAATTTCTTGTTCTGAAAACAAGAAGAACTACTGTTACATTTGTGGAAAACCACAGTCAAAAATTGCTCGTCACTTGAAGACCCACATGGCAGAAGTTGAAGTTGCAAAGGCTTTGTCATTTCCAAAGCATTCAAAAGAACGTAAAACATTACTGGAAAAAATTAGGAACAAGGGAAACTATCAGCATAATTCAAATGTTTTACAGAAAGGAAGTGGCTCGCTCAAAGTAAAAAGAAGACCAAACAGAGCCTGTGACTCGAAACAATTTGTGCACTGCATGCATTGCAAAGGGATGTTTGTGCGCAAAGACCTATGGAGGCATGTAAAACGATGTTCTTCAAAGCCTGGAACTGTAAACGCAGAGAAAGGAAGAACCAGGGTTCTGGGTCTGGCTACTCTGGCAGAGTCTACAGTTTCACAACAAATATCCCAAGGGGTTTGGAAGCTTTTAAGTGCAATGAAGCAAGATGTGATTGCATCTGTTGTGCGCAATGACTTTTGCATTCTGCAGCTAGCACAGTCTTTCTTCAACAAACATGGGAATGACCCAACCAAATTTGAGTACATTAGGCAGAAACTCCGTGAAATTGGAAGGTTTTTGCTGACTTTGCGCAGCGAGTCTTCTGTCTACAGCCTAGAAGAGGCTGTAAAACCTGCCAATTTTTCAAAAGTTATTGAAGCAGTTAAGAAGGTGTCAGGCTATGATGAAGAAATGAACTGCTACCAAACACCAAGTCTAGCTCTGAAACTGGGGCACACATTGCAGAAGGTCTGTGAGATCATTCACTGTAGGGCCCTTATGGCAGAAGATGAAGAGTTGATCAAGTCAACggagacatttaaaaaactttatacCACTAAATGGTCAGAGCTTGTTTCACACAGGGCTTTAGGGACACTGAGTGAAGCAAGATTCAACAAGCCATCAACACTGCCTTTCACCCAAGATGTTCAGCTTCTTCATAAACATCTGGAGACAGCTGCAGATGCAGCATCTGAAAATCTGAGGAAGACACCCTCACCGCAAAGCTATGCTGAGCTTGCCAAATCTACACTTGCAAGGATCATTGTTTTTAACCGGAGACGTGCTGGAGAGGTCTCAAAAATGCATCTTAAATGCTTTCAAGACAGGGATAAGACTCTTCTGCATGAAGATGTTGCATTTGGCCTTTCCAATTTCGAAAAGAAACTTTGCAGTCATTTCTGCAGAGTTGAGATCAAAGGTAAAAGAGGCAGAAAGGTCGCTGTCCTTCTCACACCAAGCATGGTTGATGCTCTGACACTTTTGGTCAGCTCAAGACTACAATGTGGAGTTCCAGATGCAAACAACTTCTTGTTCGCCAGACCCAGCTGTCAAAGTTATTACAGAGGCCAGGACTGTCTGAGGATTTATGCAGTTCAGTGTGGTGCACAAAATCCGGAACATCTCCGATCAACACACTTGCGGAAACATGTGGCTACTCTCTCACAAGTCCTCAATCTGAAAAACAATGAATTGGATCAAGTTGCAGACTTCTTGGGACATGACATTCGTGTACACCGGGAGTACTATAGACTCCCCGAAGCAACAACTCAGCTGGCTAAGATATCAAAACTCCTGCTGGCTATGGAAAAAGGATGTCTTCCCGATCTGCAGGGCAAATCACTTGATGACATTGAGATTGAAGGTATGCATTTACAAGTGCATTTTGGCAGTACCTTAAGGTGGggcacatttaaatgttttctagT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650111.1 lncRNA downstream 2245 19117525 ~ 19120375 (-) True LOC111192726
TU71774 lncRNA downstream 2695 19117466 ~ 19119925 (-) False LOC111192726
TU71753 lncRNA downstream 194688 18927326 ~ 18927932 (-) True G53209
TU71740 lncRNA downstream 229743 18848729 ~ 18892877 (-) True G53199
TU71716 lncRNA downstream 255033 18778161 ~ 18867587 (-) True G53184
TU71779 lncRNA upstream 26569 19169849 ~ 19171075 (-) True G53227
TU71786 lncRNA upstream 75367 19218647 ~ 19219263 (-) True G53234
TU71901 lncRNA upstream 126250 19269530 ~ 19301099 (-) True G53317
TU71903 lncRNA upstream 137456 19280736 ~ 19283478 (-) True G53319
TU71911 lncRNA upstream 140872 19284152 ~ 19287211 (-) True G53326
XM_022670316.1 mRNA downstream 381316 18730043 ~ 18741304 (-) True LOC111192624
XM_022670315.1 mRNA downstream 394387 18696994 ~ 18728233 (-) True LOC103028095
XM_007259722.3 mRNA downstream 433019 18656832 ~ 18689601 (-) True LOC103024498
XM_007239985.3 mRNA upstream 294353 19437633 ~ 19459375 (-) True LOC103025356
XM_022670332.1 mRNA upstream 379422 19522702 ~ 19570378 (-) True LOC103025665
XM_022670333.1 mRNA upstream 462275 19605555 ~ 19670670 (-) True LOC103036701
XM_022670334.1 mRNA upstream 539111 19682391 ~ 19839582 (-) True LOC103034301
XM_007235647.3 mRNA upstream 759013 19902293 ~ 19906073 (-) True LOC103035166
TU71687 other downstream 455333 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 2532837 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 2532837 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 2695007 16406719 ~ 16427613 (-) False zcchc4
TU70803 other downstream 2895446 16226236 ~ 16227174 (-) True G52503
TU71983 other upstream 706670 19849950 ~ 19850350 (-) True G53382
trnai-uau_7 other upstream 1159255 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 1538531 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 1640458 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 1674559 20817839 ~ 20819409 (-) True G53607

Expression Profile