RNA id: XM_022670900.1


Basic Information

Item Value
RNA id XM_022670900.1
length 3310
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC103028344
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23754737 ~ 23952929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacactcgagagagaacgcgcacacacacacacacactgtccacaGAAGAGAAAGAGTGTCATTCAGGGAGTAGAGCAGCAGGAGGAAAATGGTGCGAAAGGCTGAGAAAGTGCAGATTCACTCGTTCGTCCAGAGAGGAGATGCTTTTATGGATCCTTCTGATGAGGAAACCCAAGACAGCATGTGTCTCCTCACAGCTCCAGTAGAACCTTTCTAAACACAGCAACTTTTTCCTGGGTCAAGACCCCTTGGAATCCATTATGTAAATGCACCTCTGTCTCCTTCCTGTGATGGGAGACTGAAACATGAGCATCCGCACAGCTTTCCGGACCTCTGACCCTGGCCCTGTACCTGCTCGGATCCAGCCCCTCTAAAAGACCACCAAGGAGGGGGCACAGCATCACTGGAGGTAGCTGGAGGGCGTGGAGGAAGAAGGGGGAAGAGCCGGACGAGAAGAAGAAGATCATCCACATCCACATCATCGTTTCATAGGAATATAATTGCTTGTGGAATATAAATATCCATTATTTGGAATATCACAGAATACATTGGGAAATCCCATTAATTTGGAATACTGGGAATACTATTGTTCTGACTCGCCATCATGAAGGTGAGCCCGTCGTCCTGTCTCTGTCCTGTGCTCCTTTGTCTCTGCTTCCTGGAGAGGAGCTACGGGGCGAGCCACCATGGACAGGCCAGAGTGATCTCCAGGAACCACAACCTGACCCACAGTCACAACCAGACTAAAGACGGTGAGACAGAGGTCCACCACAGACCAAAACGGGGCTGGATATGGAACCAGTTCTTTGTCTTAGAGGAGCACATCGGGCCAGAAGCACAGTATGTTGGGAAGcTTCATTCAAACTCAGATAAAGGAGACGGTTCAGTTAGATACATCTTAAGTGGAGAAGGAGCAGGGACTATCTTCATCATAAATGAGGTAACGGGGGACATCCATGCCACGAAGAGTCTGGATCGGGAGAAGAAGTCTCACTACGTTCTCCACGCTCAGGCCATCGACATCAACACCAACAAACCCCTGGAACCAGagtcagagttcatcatcaaaGTACAGGACATAAACGACAACGCCCCCAAATTCCCAGACGGCCCCTTCGTCACACACGTGCCTGAGATGTCGGAAGTCGGTACATCCGTATTCCAAGTGACAGCGACAGATGCAGATGACCCCACCTATGGGAACAGTGCGCgggtagtgtacagtgtgttacACGGGCAGCCATACTTCTCTGTGGACCCCAAAACAGgGATAATCAGAACAGCACTGGGCGACATGGATCGAGAAGCGAAAGAGCACTACGCCGTGGTCATCCAAGCCAAAGACATGGCGGGGCAAGTGGGGGGCTTGTCTGGCTCCACCACAGTGAACATCACCCTCACTGACGTCAATGATAACCCACCCAAGTTCCCCCAAAACTTCTATACCTTATTGgaaacacttcctatgaaccctCCTCTTAATTATGAAAAGAAGAGACAGTACACATTGCACATCGCAGCGGAAAACACACACCTGGACTCTCGCTTTTCATACCTGGGATCTTTTAAGGATGATGCCACTCTGAAGATAACGGTTGGGGATGTAGATGAACCTCCAGTTTTCTCTATGGATTACTATATTATGGATGTCTATGAGAACGCCAAGATCGGAACAGAGGTGGGAGCGGTAACAGCACAGGATCCAGACAGCAAGAACAGCCCAGTCAGGTATTTCATTGAGCGAACGGAGGAAGGCGAGGGGTATTTCGACATCGAGGCTGTCAGCGGAGTTATTAGAACCACTCAGCTCCTGGACCGAGAGGACACGCCCTGGCACAACATCACCGTCATGGCAACAGAAGAGGATAACCCAAGTCTCCTGAGCCACGTTCCGGTCACAATCCAGGTCCTGGACATAAACGACAACCCACCAGAAATCAACACAGAGGAGGAAATTATTATTTGTGAAAGCACTCGAGCAGGACAGgtcatacAAACGATCACGGCTGTGGATAAGGATGACTTTGCGAATGGACAGagattttatttctctttcccTGGAGGAATTCCAGCAAACCCCAACTTCACCATAAAGGACAATGAAGaCAGCACGGCCAGTATCGTAGCGCGGCGGCGGCGGTTCCACAGGCTGACTCAGGAGCTGTACGAGTTGCCGGTGGTGGTGTGGGATGGAGGCGAGCCGCTCCTGAGCAGCACCAGCACTCTCACGCTGCGGGTGTGCCCGTGCCAGCGTGGCTCCAGGCTGAAGATCTGCCAGAGCGAGGCCTTCCTCTCCTCCGCCGGCCTCAGCACTGGAGCGCTCATCGCCATCCTGCTGTGTGTGCTCATACTGCTCGCCATCGTGATTCTGTTCATCACGTTACGACGGAGTAAAAAGGAGCCGCTGATCATCTCTGAGGAAGACATTCGGGAGAACGTGGTTACCTATGACGATGAAGGAGGCGGGGAGGAGGACACCGAGGCCTTCGACATCATCGCTCTGAGAAATCCAGAAGCTGCAGAGGAGCTGAAGTACAGGCGAGACGTTCGGCCCGAGGGCAGCCGGCCAGGTTCTTCTTGCCGGCCGCACCGTCGCCACGGCGCCCACAGCCCCTCCTTCCTGGGGACGGAGGAAGAAATGGACGTCCGTGACTTTATTAAACAGAGACTAGCAGAGGCGGACCAGGACACCAGCATACCGCCTTACGATTCTTTACAGACATACGCATTCGAAGGGCAGGGCTCGCCGGCAGGTTCCATCAGCTCCCTGGGGTCAGCCGGCGTCCACTCGGAACAGGATTACAAATATCTGGACGACTGGGGTCCGGAATTTCAAAAACTAGCCGAACTCTACGCAGAGGAGGTCGACGTACAATCCGAATCCACTACGAAAGACACAGAGGAACAGacttaaatgcttttttttttttttagactgatGAAAAACTTTAAACAATACTTCAAAACAAAGACAAGATAAACTGGCCTCTTTTTTGCTACCCCAGATTTCATTGTTTATCAATAACGTGAGATGTTCTCGGACCGTGACCCTGCCGAAAATTCCAGCCGGCTGCAAAAGACACTCCGGCTGCTGTTGTTCTTCTCGTGCTTTTGGATCCTTTGAACTGTAGATCCTAAGAAGAGAATGAATGAGAGTTGATtttgagaagaaaaagagaaaaatctttacaaaaaaaaaagaaaacactaatggaaaaagaaaatattttccctggtgtatattttttattgctcaATAAAAAGTCCTTAATTCTGGACACATGGATATATGTGATAAAAAGTGTTA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06805 CDH18; cadherin 18, type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650048.1 lncRNA upstream 30132 23569349 ~ 23724605 (+) True LOC111192638
TU72886 lncRNA upstream 121351 23632913 ~ 23633386 (+) True G54063
TU72869 lncRNA upstream 191419 23557754 ~ 23563318 (+) True G54050
TU72867 lncRNA upstream 192008 23557027 ~ 23562729 (+) True G54049
TU72864 lncRNA upstream 217613 23536733 ~ 23537124 (+) True G54046
XR_002650113.1 lncRNA downstream 6520 23959449 ~ 24048897 (+) True LOC111192728
TU72945 lncRNA downstream 192759 24145688 ~ 24145986 (+) True G54120
TU72954 lncRNA downstream 320088 24273017 ~ 24290765 (+) False epc1
TU72960 lncRNA downstream 357983 24310912 ~ 24359605 (+) True G54130
TU72973 lncRNA downstream 525317 24478246 ~ 24478730 (+) True G54139
XM_007250137.3 mRNA upstream 311670 23158042 ~ 23443067 (+) True LOC103025909
XM_022670362.1 mRNA upstream 1024247 22495776 ~ 22730490 (+) True LOC103025391
XM_007259679.2 mRNA downstream 262194 24215123 ~ 24226834 (+) True LOC103038196
XM_007259675.3 mRNA downstream 301258 24254187 ~ 24290762 (+) False epc1
XM_007259674.3 mRNA downstream 307393 24260322 ~ 24290762 (+) True epc1
XM_015608463.2 mRNA downstream 378693 24331622 ~ 24356664 (+) True kif5b
XM_007259664.3 mRNA downstream 411915 24364844 ~ 24463165 (+) True arhgap12
TU72536 other upstream 1833143 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 2929063 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 3193903 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 3327534 20419221 ~ 20427203 (+) False LOC103044634
TU73348 other downstream 1593063 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 1611732 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 1612313 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 1613966 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 1616217 25569146 ~ 25569217 (+) True trnaw-cca_4

Expression Profile