RNA id: TCONS_00000100


Basic Information

Item Value
RNA id TCONS_00000100
length 620
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_000048
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2260407 ~ 2299553 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGCCTCTGCTGCTGGAGTGCGCTCGTGTCCGTGGCCCAGAATACCTCACTCAGATGTGGCACTTCATGTGTGACGCCCTCATCAAAGCCATCGGCACTGAACCAGACTCAGACGTGCTGTCAGAAATCATGCATTCATTCGCTAAGTGCATCGAGCTGATGGGTGACGGATGCCTGAACAATGAACACTTTGAGGAGCTCGGCGGCATCCTGAATGGACTGGTGTTGGTTGAGCTCTACTGCAGCAGAGCGATGATGCTGCGGTCgactttagtttgtttttgttttgttctttcggCTTTTTGTTTTCTCTTCGGCACCGGTCCTGATGGCTGGTGCTGATGTTTGGGAGAATCGGGCATCGTTTGCTCCTccgctgatgatgatgatgtcctAACAGTGTCTGTCATTGGCTCTCTTAATCCATGCAAAGAAATAcacaaacatgaataaaacagCGACTCTGGGTTCAGGGCTTCTCATATGAAGGAAATGCGCAAGTCTGAAGCCGTTTGGTTTGGCTGACGGTTTGTCACGTGTCCATCGAACATTTGTATGATATGCAATCTATCCTGGTTAATCATTTTACAACACTTTCAGTATTAAAGCTGCAAGACA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030424-2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).

Ensembl:

ensembl_id ENSDART00000140507

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002808 lncRNA upstream 263204 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 281217 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 387006 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 494326 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 555365 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00003016 lncRNA downstream 1419120 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2298514 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2601914 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 3011933 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA downstream 3011933 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00000096 mRNA upstream 46730 2222363 ~ 2240119 (+) True XLOC_000047
TCONS_00000093 mRNA upstream 68988 2129175 ~ 2217861 (+) False XLOC_000046
TCONS_00000095 mRNA upstream 72449 2190714 ~ 2214400 (+) True XLOC_000046
TCONS_00000090 mRNA upstream 72532 2128970 ~ 2214317 (+) False XLOC_000046
TCONS_00000103 mRNA downstream 2415 2301961 ~ 2394973 (+) False XLOC_000050
TCONS_00000105 mRNA downstream 2428 2301974 ~ 2409126 (+) False XLOC_000050
TCONS_00000106 mRNA downstream 2428 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000107 mRNA downstream 21838 2321384 ~ 2394768 (+) False XLOC_000050
TCONS_00000109 mRNA downstream 132410 2431956 ~ 2443772 (+) True XLOC_000050
TCONS_00000099 other upstream 11107 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000094 other upstream 72452 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000069 other upstream 493478 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 554523 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 563692 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000102 other downstream 2412 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000104 other downstream 2426 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000108 other downstream 103557 2403103 ~ 2403224 (+) True XLOC_000051
TCONS_00000111 other downstream 1460378 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000117 other downstream 3102988 5402534 ~ 5418507 (+) True XLOC_000060