Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000101 |
| length | 1123 |
| lncRNA type | sense_over |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_000048 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 2260407 ~ 2299553 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006606 | protein import into nucleus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008139 | nuclear localization sequence binding | molecular_function |
| GO:0061608 | nuclear import signal receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002808 | lncRNA | upstream | 272946 | 2023409 ~ 2023645 (+) | True | XLOC_000044 |
| TCONS_00003015 | lncRNA | upstream | 290959 | 2001716 ~ 2005632 (+) | True | XLOC_000043 |
| TCONS_00000077 | lncRNA | upstream | 396748 | 1898909 ~ 1899843 (+) | True | XLOC_000039 |
| TCONS_00000073 | lncRNA | upstream | 504068 | 1790772 ~ 1792523 (+) | True | XLOC_000036 |
| TCONS_00000071 | lncRNA | upstream | 565107 | 1730392 ~ 1731484 (+) | False | XLOC_000036 |
| TCONS_00003016 | lncRNA | downstream | 1419120 | 3718666 ~ 3720603 (+) | True | XLOC_000053 |
| TCONS_00000113 | lncRNA | downstream | 2298514 | 4598060 ~ 4680477 (+) | True | XLOC_000056 |
| TCONS_00002809 | lncRNA | downstream | 2601914 | 4901460 ~ 5030155 (+) | True | XLOC_000057 |
| TCONS_00003018 | lncRNA | downstream | 3011933 | 5311479 ~ 5313595 (+) | False | XLOC_000059 |
| TCONS_00003017 | lncRNA | downstream | 3011933 | 5311479 ~ 5313595 (+) | True | XLOC_000059 |
| TCONS_00000096 | mRNA | upstream | 56472 | 2222363 ~ 2240119 (+) | True | XLOC_000047 |
| TCONS_00000093 | mRNA | upstream | 78730 | 2129175 ~ 2217861 (+) | False | XLOC_000046 |
| TCONS_00000086 | mRNA | upstream | 80229 | 2101541 ~ 2216362 (+) | False | XLOC_000046 |
| TCONS_00000085 | mRNA | upstream | 80229 | 2101541 ~ 2216362 (+) | False | XLOC_000046 |
| TCONS_00000084 | mRNA | upstream | 80229 | 2101541 ~ 2216362 (+) | False | XLOC_000046 |
| TCONS_00000103 | mRNA | downstream | 2415 | 2301961 ~ 2394973 (+) | False | XLOC_000050 |
| TCONS_00000105 | mRNA | downstream | 2428 | 2301974 ~ 2409126 (+) | False | XLOC_000050 |
| TCONS_00000106 | mRNA | downstream | 2428 | 2301974 ~ 2444210 (+) | False | XLOC_000050 |
| TCONS_00000107 | mRNA | downstream | 21838 | 2321384 ~ 2394768 (+) | False | XLOC_000050 |
| TCONS_00000109 | mRNA | downstream | 132410 | 2431956 ~ 2443772 (+) | True | XLOC_000050 |
| TCONS_00000098 | other | upstream | 7818 | 2272261 ~ 2288773 (+) | False | XLOC_000048 |
| TCONS_00000099 | other | upstream | 20849 | 2275605 ~ 2275742 (+) | True | XLOC_000049 |
| TCONS_00000094 | other | upstream | 82194 | 2190700 ~ 2214397 (+) | False | XLOC_000046 |
| TCONS_00000069 | other | upstream | 503220 | 1718611 ~ 1793371 (+) | False | XLOC_000036 |
| TCONS_00000070 | other | upstream | 564265 | 1719207 ~ 1732326 (+) | False | XLOC_000036 |
| TCONS_00000102 | other | downstream | 2412 | 2301958 ~ 2302623 (+) | False | XLOC_000050 |
| TCONS_00000104 | other | downstream | 2426 | 2301972 ~ 2441683 (+) | False | XLOC_000050 |
| TCONS_00000108 | other | downstream | 103557 | 2403103 ~ 2403224 (+) | True | XLOC_000051 |
| TCONS_00000111 | other | downstream | 1460378 | 3759924 ~ 3760034 (+) | True | XLOC_000054 |
| TCONS_00000117 | other | downstream | 3102988 | 5402534 ~ 5418507 (+) | True | XLOC_000060 |
