RNA id: TCONS_00000106


Basic Information

Item Value
RNA id TCONS_00000106
length 3696
RNA type mRNA
GC content 0.52
exon number 27
gene id XLOC_000050
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2301958 ~ 2444210 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGGAAGACGGTGGCTTTCCGCGCTATCCGCGAATAAGCGCCGAAAAACCCGTTTCACGCCACTTCAGCCGCCGCGCCGCGCGTTTTTTTCCAGCGGAATATCATTTAAAGACACCCTCGCGGACATATCAGCTCACAGCGAGTGCTCATTCAGCTTTTAAAGGTGGGTTTGCTGCAGTATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGGCAGAGACTCGGGGCACCTGAGAGTCTGGGCATCAGCACACTGGAGCCTGGGCAGCGGCCCCCCACTATGCCCCCCGGGAGACAGATCTCCATCCGTGTCCAGATGCTGGACGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCCCCAGGGAAGGCGCTGTTTGACCTGGTTTGTTCTCATCTCAACCTCGTCGAGGGCGATTACTTCGGTTTGGAGTTTCAGGATCAGCGGAAAATGATTGTGTGGCTGGATCTGCTGAAGCCAATTCTCAAGCAGATTAGACgaCCCAAAAACATCATCCTGAGATTtgtggtgaagttttttcctcctGATCACACACAGCTCTTAGAGGAGCTCACCAGGTATCTGTTCGCTCTGCAGATCAAGCATGATCTGGCCTGTGGACGCCTGACCTGTAATGAGAGCAGCGCCGCCCTGCTGGTGGCTCATATAGTGCAGTCTGAGATTGGAGACTTTGATGAAGTGCAGTGCAAACAACATCTGCTCAACAACAAGTATATTCCAGAGCAGGACACACTGATGGACAAGATCATTGGATACCACCGCAAACATGTTGGACAAACACCAGCTGAATCTGACTACCAGCTTCTGGAGATCGCAAGGAGACTTGAGATGTATGGAGTGCGTCTTCATCCGGCAAAAGATCGAGAGGGTACAAGACTCAGCCTCGCCGTGGCTCATTCTGGTGTGCTGGTCTTTCAGggGCACACCAAGATAAATGCATTCAATTGGTCTAAAGTTCGGAAACTGAGCTTCAAGAGGAAACGCTTTCTTATAAAACTACGGCCTGATTTGAATAGTAACTGTCAGGATACTCTGGAGTTTATGATGGGAAGCAGGGACTGCTGTAAGGTGTTCTGGAAGATTTGTGTGGAGTACCATGCCTTTTTTCGCCTGTTTGAAGAACCCAAACCCAAGCCTAAACCAGTTCTGTTCACCAGAGGTTCCTCCTTCAGGTTCAGTGGCCGCACACAGAGGCAGGTGATTGATTATGTAAAGGACACTGAATTCAAAAAGGTTCCCTTTGAAAGAAAACACAGTAAAATCCAGTCCAACAGCAATCTTTCTCCATTCCCATCCAGGCAGAGTGCTGAGGGTCAAGGAGAGAGGAATGCCAGTGCTTCAGGACATCAGGCGGACTCGCCTCTTGGGCGCACTCAAGTGACTGTTGAAAACCCGGCTCTCCAGCGTTACACCGGGAGCCTAAACTCACAGACCAATGGATGTCGAAACGGGACCAGCGATGAGGCGGATGCTCGATTAAAGCCGTCCCCATCCAAACAACAGGCCGAGCATCTGAGCACAGGTCCAGTGAGCCGCAGTCCTCAGCACAGCGAGTCTCCGTCTGCAGGACAGATGATGGTGAACGGCCAGAAGCAGAGTCTGAGCGTAGGCCAGAGTCCTGACGGACGGCAGCCCTCTCCTCTCACCAGCCCGCTACTATACGACGCCGGATTCATCCGCGCAGACGACGAGGACGAGAGGTTTCCGACTGATAAAGCGTACTTTATTGCCAAAGAGCTGCTGACCACAGAGAGGACGTATCTGAAGGACCTGGAGGTCATCACTGTGTCCTTTCAGAAGGCCGTGCTAAAGGATGAGGCCATGCCGGATTCATTGAGGAATCTCATATTCGCCAATTTTGAGCCGGTGTATAAGTTCCATGAGACGTTCCTGAAAGACGTGGAGCAGCGACTCGCACAGTGGGAAGGCAGATCAAACGCACACATTAAAGGAGATTACCAGCGCGTGGGTGATGTCATGCTCAAGAACATCCAGGGCCTGAAGCTGCTGTCAAGTCATCTGCAGAAGCACTCTGAGTCTCTGCTGGAGCTGGAGCAGTCGTGCCGCTCGTCTCGCCGGCTGGAGGTGTTGTGTCGAGACTTCGAGTTGCAGAAGGTGTGTTACCTGCCGCTCAACATCTTCTTCCTGCGGCCGCTGCACCGCCTGCTGCACTACAAGCAGATCCTTGAGCGCCTCTGCAAACACTACCCTCCGACACACGACGACTTCAGAGACTCACGAGctgcgCTGGCGGACGTCTCAGAGCTGGTTCTTCAGCTTCACACCACACTCATGAAGATGGAGAATTTCCAGAAGCTTCTGGAGCTCAAGAAAGACCTGGTGGGCATCGACAGCCTGGCGGCTCCTGGACGGGAGTTCATCAGGCTCGGCTGTCTCAGCAAACTCTCTGGGAAAGGCCTCCAGCAGAGGATGTTCTTCCTGttcAGTGATGTTGTGATGTACACGAGTCGAGGATTGACGGCGTCCAATCAGTTTAAAGTTCACGGTCAGCTTCCTCTCTACGGCATGACGATTCGGGAGAGCGAGGACGAGTGGGGTGTCCCGTATTCATTCACTCTGTTCGGACAGCGGCAGTCTGTCGTCGTCGCCGCCAGCTCAGCGTCTGAGATGGAGAAGTGGATAGAGGACATCAGGATGGCCATTGAACTGGCAGACAAGAGCAACGGACCGACCACTGAGATCCTGTCCAGCAGCTTCAGTGACAGCAAGTCTCCTGAAGACTGTAGTGCAGACCAGGAGTCAGAAGACGACCTCAGCTCCTCTCGATCCTCTCTGGAGCGCCAGACTCCTCACCGTGGTAATACCACGGTACACGTCTGCTGGCACCGCAGCACCAGCGTGTCCATGGTGGACTTTAGCGTAGCGCTGGAGaatcAGTTGTCTGGGAATCTGCTGAGGAAGTTCAAGAACAGCAACGGCTGGCAGAAGTTATGGGTGGTTTTCACAAACTTCAGTCTGTTCTTCTACAAAACACACCAGGATGAGTATCCTCTGGCCAGTCTCCCTCTGCTGGGTTACTCCATCACCATTCCCTCAGAGTCAGAAAACATCCACAAGGATTACGTCTTCAAGCTGCATTTCAAATCACACGTCTATTATTTCAGATCTGAGAGCGAGTACACATTTgagagatgGATGGAGGTGATCCGCAGCGCCACCTGCTCCTCCAGTGTCCTTCGCTCCTCCAGCCGGAAAGATCCGCTGGTGTACTGACCAAAAACACGCCTGTCCTCAATCAGGTCCTCTCTCTATCTGCTTCACCCCCCATTCCTGACTCTATTGACCGTCTCTGAAGACTCTGACGGGTTTAGATGTGAAgtacagcagaaacacacacacacacacacacacagacgtcaGTGTGACACGGTGCTTTCAGGAACACACTCAACATGAAGATGGTTATGAATGTGAAGTCGATATTATTTGTGACAGTGCTTTTGTAGGTGTTTTTGGATGCTGCGGTGAATGTGAGCGACGCGGTGGTTTCCTGTTTTATGAACTGTTTTTATACGCAGAAACACCTCAGCTTTATATTAAACATCAGATTCAGAATTCAGAAGTCGTGTTGATGCTTTTCAGTCTTTAGACAATGGAAAAAGATGTGCAGAGCTTATAATTGACAGGGGAAAGAGagattttgttgtatgt

Function

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:1901981 phosphatidylinositol phosphate binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-070424-163 Predicted to enable guanyl-nucleotide exchange factor activity; phosphatidylinositol phosphate binding activity; and phosphatidylserine binding activity. Acts upstream of or within glomerular filtration. Predicted to be located in cytoskeleton. Orthologous to human FARP1 (FERM, ARH/RhoGEF and pleckstrin domain protein 1).

Ensembl:

ensembl_id ENSDART00000142944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000101 lncRNA upstream 2428 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00002808 lncRNA upstream 278329 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 296342 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 402131 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 509451 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00003016 lncRNA downstream 1274456 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2153850 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2457250 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 2867269 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA downstream 2867269 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00000097 mRNA upstream 2421 2260407 ~ 2299553 (+) False XLOC_000048
TCONS_00000096 mRNA upstream 61855 2222363 ~ 2240119 (+) True XLOC_000047
TCONS_00000093 mRNA upstream 84113 2129175 ~ 2217861 (+) False XLOC_000046
TCONS_00000095 mRNA upstream 87574 2190714 ~ 2214400 (+) True XLOC_000046
TCONS_00000092 mRNA upstream 87747 2129164 ~ 2214227 (+) False XLOC_000046
TCONS_00000110 mRNA downstream 268746 2712956 ~ 3036019 (+) True XLOC_000052
TCONS_00000112 mRNA downstream 1657531 4101741 ~ 4154332 (+) True XLOC_000055
TCONS_00000114 mRNA downstream 2829271 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA downstream 2831601 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000116 mRNA downstream 2958266 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000100 other upstream 2428 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000098 other upstream 13201 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other upstream 26232 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000094 other upstream 87577 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000070 other upstream 569648 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000111 other downstream 1315714 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000117 other downstream 2958324 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000120 other downstream 2993180 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other downstream 2994533 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000123 other downstream 3053075 5497285 ~ 5502084 (+) True XLOC_000062

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_00419297_00444862.mRNA True 3534 mRNA 0.47 18 CI01000299 419297 ~ 445888 (+)