RNA id: TU14731


Basic Information

Item Value
RNA id TU14731
length 516
lncRNA type sense_over
GC content 0.40
exon number 1
gene id CI01000001_00872245_00878013
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 870806 ~ 878013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAACATTCTACTTTTTCAGTCATTGACTTGCTTTTACCTTTTAAATTGTGTTGTAACTGTAAGGTGTGTGTGTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14747 lncRNA downstream 10278 860239 ~ 860528 (-) True G13236
TU14450 lncRNA downstream 41188 829368 ~ 829618 (-) True G13009
TU14440 lncRNA downstream 50218 820389 ~ 820588 (-) True G12999
TU14438 lncRNA downstream 52679 817787 ~ 818127 (-) True G12997
TU14346 lncRNA downstream 159490 614220 ~ 711316 (-) True G12907
TU14773 lncRNA upstream 44927 916248 ~ 916447 (-) True G13262
TU14775 lncRNA upstream 47918 919239 ~ 919520 (-) True G13264
TU14776 lncRNA upstream 49594 920915 ~ 921145 (-) True G13265
TU14777 lncRNA upstream 49942 921263 ~ 921485 (-) True G13266
TU14797 lncRNA upstream 81424 952745 ~ 952993 (-) True G13286
CI01000001_00839822_00841040.mRNA mRNA downstream 28385 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 56165 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 64264 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_00716122_00741331.mRNA mRNA downstream 129186 716103 ~ 741620 (-) True CI01000001_00716122_00741331
CI01000001_00636063_00642086.mRNA mRNA downstream 228427 636042 ~ 642379 (-) True CI01000001_00636063_00642086
CI01000001_00925612_00928679.mRNA mRNA upstream 54119 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_01030701_01030988.mRNA mRNA upstream 158933 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 162015 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 185131 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 196319 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
TU14337 other downstream 473673 367242 ~ 397133 (-) True G12898
TU14333 other downstream 613289 257372 ~ 257517 (-) True G12894
TU14263 other downstream 735881 129502 ~ 134925 (-) True G12848
TU14286 other downstream 745349 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 892348 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1122889 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1184653 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1388068 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3520993 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile