RNA id: TU14777


Basic Information

Item Value
RNA id TU14777
length 223
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G13266
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 921263 ~ 921485 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATATTTTCCTATACTTCCTACTAAGAGAAACAACGTGAAGTTGACCATTGAGTTACTGGTTTGATTTACTGACACACAGACAAAGAACATCTCTGACTGTACATGAGTCATTACATATCAGAAATCACTAGTCACAGATCAGGCATTAGAATTAACACAGTTACTTACATGTTGTCGCATTACTGTTGAGTCCATATCGTAAAAGTCTGTTTGCAGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14776 lncRNA downstream 118 920915 ~ 921145 (-) True G13265
TU14775 lncRNA downstream 1743 919239 ~ 919520 (-) True G13264
TU14773 lncRNA downstream 4816 916248 ~ 916447 (-) True G13262
TU14730 lncRNA downstream 49808 870862 ~ 871455 (-) True CI01000001_00872245_00878013
TU14731 lncRNA downstream 49942 870806 ~ 871321 (-) False CI01000001_00872245_00878013
TU14797 lncRNA upstream 31260 952745 ~ 952993 (-) True G13286
TU14804 lncRNA upstream 61438 982923 ~ 983336 (-) True G13293
TU14842 lncRNA upstream 110799 1032284 ~ 1033040 (-) True G13325
TU14847 lncRNA upstream 122176 1043661 ~ 1045223 (-) True G13330
TU14894 lncRNA upstream 165318 1086803 ~ 1115769 (-) True G13370
CI01000001_00872245_00878013.mRNA mRNA downstream 43250 870880 ~ 878013 (-) False CI01000001_00872245_00878013
CI01000001_00839822_00841040.mRNA mRNA downstream 78842 839630 ~ 842421 (-) True CI01000001_00839822_00841040
CI01000001_00808831_00814314.mRNA mRNA downstream 106622 807938 ~ 814641 (-) True CI01000001_00808831_00814314
CI01000001_00754687_00806154.mRNA mRNA downstream 114721 754565 ~ 806542 (-) True CI01000001_00754687_00806154
CI01000001_00716122_00741331.mRNA mRNA downstream 179643 716103 ~ 741620 (-) True CI01000001_00716122_00741331
CI01000001_00925612_00928679.mRNA mRNA upstream 3955 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_01030701_01030988.mRNA mRNA upstream 108769 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_01033836_01034518.mRNA mRNA upstream 111851 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01056812_01066005.mRNA mRNA upstream 134967 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01068423_01079855.mRNA mRNA upstream 146155 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
TU14337 other downstream 524130 367242 ~ 397133 (-) True G12898
TU14333 other downstream 663746 257372 ~ 257517 (-) True G12894
TU14263 other downstream 786338 129502 ~ 134925 (-) True G12848
TU14286 other downstream 795806 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 842184 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 1072725 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 1134489 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1337904 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3470829 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile