RNA id: TU14895


Basic Information

Item Value
RNA id TU14895
length 649
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G13371
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1092516 ~ 1093860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAAAGAAGGAAAACGCATAAAATGTTGCGAGTTCAGAGGGCAATTATCATTTTTCATCGTTTTGGTACTATGGGAAGATGCCAAGGTGTATCGTATGCGATTCTCAAGATCAGAGTGACATCATCAGGGTCAAATGTCATAGGTTAGATTGGAGCTAGTTATCTTTTTCTTTTTTTTTTCTTTTTAACTCCAGTGAGTATTTCTCAAATTATGTAGTCTTGGCTACAAAAATGATGAAAAATTCCACAATTTCCACAAGTTCATTCAAAACACTTTTTTTTTTTTTTGTATGGGGTAAGTTGTCAGAGCAATCTGGTATTAAAGGGATAGTTTGCCCAAAAATGAAAATTCTGTCATCGTTTAATCCCCCTTAAGTTGTTCCATACCTGTATGAATTTCTTTGTTCTGCTGAACACAAAGGAAGATATTTGGAAGAATGTTTGTAACCAAGCAGATTTCGTCCCCCATTGACTACCATAGTATTTTTTTTTTTCCTACTGTGGTAGTCCAAATATCAAATATCTTCCAAATATCTTCAGAGCAAAGAAATTTATACAGGTTTGGAAAAATTTGAGGGTGAGTAAATGACAGAATTTTAATTTTGCGTCAACTATCCCTTTAAACGCTTACTTAACATTAAAACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14847 lncRNA downstream 47293 1043661 ~ 1045223 (-) True G13330
TU14842 lncRNA downstream 57596 1032284 ~ 1033040 (-) True G13325
TU14804 lncRNA downstream 109180 982923 ~ 983336 (-) True G13293
TU14797 lncRNA downstream 139523 952745 ~ 952993 (-) True G13286
TU14777 lncRNA downstream 171031 921263 ~ 921485 (-) True G13266
TU14887 lncRNA upstream 92300 1186160 ~ 1215510 (-) True G13364
TU14880 lncRNA upstream 94614 1188474 ~ 1190419 (-) False G13361
TU14882 lncRNA upstream 94614 1188474 ~ 1234796 (-) True G13361
TU14934 lncRNA upstream 158265 1252125 ~ 1252348 (-) True G13409
TU14935 lncRNA upstream 159135 1252995 ~ 1253293 (-) True G13410
CI01000001_01068423_01079855.mRNA mRNA downstream 11899 1067640 ~ 1080617 (-) True CI01000001_01068423_01079855
CI01000001_01056812_01066005.mRNA mRNA downstream 26393 1056452 ~ 1066123 (-) True CI01000001_01056812_01066005
CI01000001_01033836_01034518.mRNA mRNA downstream 57841 1033336 ~ 1034675 (-) False CI01000001_01033836_01034518
CI01000001_01030701_01030988.mRNA mRNA downstream 61352 1030254 ~ 1031164 (-) True CI01000001_01030701_01030988
CI01000001_00925612_00928679.mRNA mRNA downstream 163567 925440 ~ 928949 (-) True CI01000001_00925612_00928679
CI01000001_01158947_01164142.mRNA mRNA upstream 64538 1158398 ~ 1165151 (-) True CI01000001_01158947_01164142
CI01000001_01199556_01205086.mRNA mRNA upstream 105638 1199498 ~ 1205086 (-) True CI01000001_01199556_01205086
CI01000001_01293807_01304836.mRNA mRNA upstream 199838 1293698 ~ 1304836 (-) True CI01000001_01293807_01304836
CI01000001_01313263_01351961.mRNA mRNA upstream 218827 1312687 ~ 1352235 (-) True CI01000001_01313263_01351961
CI01000001_01368611_01369774.mRNA mRNA upstream 274545 1368405 ~ 1369799 (-) True CI01000001_01368611_01369774
TU14337 other downstream 695383 367242 ~ 397133 (-) True G12898
TU14333 other downstream 834999 257372 ~ 257517 (-) True G12894
TU14263 other downstream 957591 129502 ~ 134925 (-) True G12848
TU14286 other downstream 967059 122814 ~ 125457 (-) False CI01000001_00124107_00131285
TU15779 other upstream 669809 1763669 ~ 1767458 (-) False G14104
TU15917 other upstream 900350 1994210 ~ 1994898 (-) True G14219
TU15926 other upstream 962114 2055974 ~ 2056478 (-) True G14228
TU15886 other upstream 1165529 2262344 ~ 2297212 (-) True G14188
TU17347 other upstream 3298454 4392314 ~ 4399515 (-) True CI01000001_04395469_04399381

Expression Profile