RNA id: CI01000004_07903583_07906667.mRNA



Basic Information


Item Value
RNA id CI01000004_07903583_07906667.mRNA
length 767
RNA type mRNA
GC content 0.44
exon number 8
gene id CI01000004_07903583_07906667
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7903583 ~ 7906670 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACACAAGCATTACAGAGATATGGCTCTTTAATAGTGTCGCTGAGTAAATGTAGCGGTAGGTTTGTTTACCCCTGTAAGTATCCACCCTCAAAGTGGTGCGACTCTGAAGACATTGCAGCCGAATGTGGGGTGCTGGAGCAATGCGCGAAGTTTAATGTCACAAAGCCCAACGCTGACAAAGTGAATGTGAGCCTGTACTATGAGTCTTTGTGTCCTGGATGCAGAAGTTTTCTTGTATTGCAGCTCGTGCCAACCTTCATTATGTTGTCAGACATCATGAACATTGATCTGGTTCCATATGGAAATGCACAGGAGAAAGAAGATCAGGGGAAGTACACCTACGTCTGTCAGCACGGAGAGGATGAATGTCTAGGTAACATGATTGAGACCTGCCTGATGAATAAATTAGGCATCAACGCTTTTCCAGTCATTTTTTGCATGGAGTCAGGAGCAGATGTGCTGAAAGCAGCCCAGCCTTGTCTTGGAGTCTATTTTCCTGAAGTGACATGGGATTCAGTCATGGAGTGTGTGAAGGGAGACCAGGGCAATAAATTAATGCATGAAAATGCAGTGAAAACAAGTTCTCTGAAGCCCCCTCATGAGTATGTGCCTTGGATAACCATTAATGGAGAACACACAGAGGACCTTCAAGATAAAGCAATGAATTCTCTCTTCAGTCTTGTGTGCAGTTTGTACAAGGGTGAAAAAACACCTGCTTGTGGTCAAGGGTTGAAGAAAACCAGCAGTTACTGCATGAAGTAATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32553 lncRNA upstream 75901 7827368 ~ 7827682 (+) True G28791
TU32552 lncRNA upstream 81566 7821817 ~ 7822017 (+) True G28790
TU32546 lncRNA upstream 98930 7804266 ~ 7804653 (+) True G28784
TU32542 lncRNA upstream 137194 7765563 ~ 7766389 (+) True G28780
TU32541 lncRNA upstream 138872 7764512 ~ 7764711 (+) True G28779
TU32559 lncRNA downstream 76811 7983481 ~ 7983777 (+) True G28797
TU32562 lncRNA downstream 118821 8025491 ~ 8025898 (+) True G28800
TU32563 lncRNA downstream 121580 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA downstream 121580 8028250 ~ 8032070 (+) True G28801
TU32591 lncRNA downstream 370532 8277202 ~ 8284097 (+) True G28819
CI01000004_07868939_07899539.mRNA mRNA upstream 3377 7868620 ~ 7900206 (+) True CI01000004_07868939_07899539
CI01000004_07843003_07860951.mRNA mRNA upstream 41159 7843003 ~ 7862424 (+) True CI01000004_07843003_07860951
CI01000004_07823292_07824588.mRNA mRNA upstream 77380 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
CI01000004_07775338_07780352.mRNA mRNA upstream 122265 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07759670_07760529.mRNA mRNA upstream 142586 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07907663_07910335.mRNA mRNA downstream 993 7907663 ~ 7910478 (+) True CI01000004_07907663_07910335
CI01000004_07911608_07916117.mRNA mRNA downstream 4938 7911608 ~ 7916155 (+) True CI01000004_07911608_07916117
CI01000004_07945349_07952716.mRNA mRNA downstream 38386 7945056 ~ 7952716 (+) True CI01000004_07945349_07952716
CI01000004_07954612_07959231.mRNA mRNA downstream 47566 7954236 ~ 7959726 (+) True CI01000004_07954612_07959231
CI01000004_07962260_07967751.mRNA mRNA downstream 55590 7962260 ~ 7968607 (+) True CI01000004_07962260_07967751
TU32454 other upstream 247200 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1329162 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1401496 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2170582 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2529780 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 527035 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 692565 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1069768 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1069768 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2590706 10497376 ~ 10497788 (+) True G30797

Expression Profile