RNA id: CI01000004_15291659_15296777.mRNA



Basic Information


Item Value
RNA id CI01000004_15291659_15296777.mRNA
length 2399
RNA type mRNA
GC content 0.42
exon number 8
gene id CI01000004_15291659_15296777
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15291659 ~ 15297847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGGTCAGTGAACCTACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTGCGCTTTAACTGTCCCACCAAATCCACCAACATGATAGGGCATCGAGTGGATTACTTTGTCGCATCTAAAGCAGTCGACTGTCTGCTGGATTCAAAGTGGGCCAAAGCAAAGAAGGGGGAGGAAGCTTTGTTCACAACCAGAGAGTCGGTGGTGGACTACTGCAACAGGCTCCTAAAGAAGCAGTTTTTCCACCGAGCCCTGAAAGTGATGAAGAAGAAGCCAGAGAAAGATGACGACAGTCCAGGATCTCCAAAGAAGAAGAAGGATGTGAAAAAGAAGTTCAAGCTGGAACCTCATGAGGACCAACTGTTCTTGGATGGCAGTGAGGTTTATTTTTGGATTTATGATCCAGTCCACTTTAAAACCTTTGCCATGGGATTGATTCTAGTCATTGCCGTCATCGCAGCCACTCTGTTCCCCCTGTGGCCTGCCGAGATGAGAGTCGGCGTGTATTACCTGAGCGTGGCAGCAGGATGCTTCGTCGCCAGCATATTACTTCTGGCTGTTGCTCGTTGCATCTTGTTCCTGATCATCTGGCTGGTGACCGGCGGCCGTCATCACTTCTGGTTCCTACCGAACTTGACAGCCGACGTGGGCTTTATCGACTCTTTCCGGCCCCTCTACACACACGAGTACAAGGGTCCGCGCTCCAGCTCCAAGAAATCCAACGGTGAGAAATCGGACAAGGGCACGGATTCCAGCAAAGCGCAGAAATCAGATAGCGAGGACAAATCGGACAGCGAGAAGAAAGACGGCGAGGAGGAAGAGGATGAAGACGAGAATAAAGAAATGGAGGAAGCGGGCGCAGAGCGTCATCATAAATCTCAATGGCACTTGACCTGTGATTATTTCTTTGTGGAACTCTGGGAGATCTTGCTTGGTTTGGGACGAGAGATGTATTTTTGTGTACATGACACATTATACATTTCTGCAGTCACATTTTGTGACCCTACTGAGAAATACTCCTTGTTAACGGAAATGGAGAAGTTAATAAATCAGAGCAGTATCCTTGACTGTGGTAGGAAGTTATTAAAAACCAAACTCAATTTGAGTCTTATGAGGACGTCTGCATTCAGAAGGGGGAAACTACATCCACATTCGTGCCAAATGATGCGGGATATCGATGCTTTTCTTTTTAATGTACATTCAAATTATGACCAACTTACAGATCGAGTTCAAACGTGTCATGCCGTAGCTCGTACAGTATGTCCTCTAGAGCCAATCACATCCGTGCATCATAGCCTCTGGTTCTCCCGTCTGGTTTTCAAAGTCCGAGGTTGACAAATCGTACTTCCCCAAGCGGCTGTGGTCCAAAATAGTTAAGTTAGTTTGCATTTTAACAGGGCCAAGGTCCAATACTATCTTTCCGTAGGGTTGCATACTATTGGCTAGAGTATTATTTTACATTAGCTGTTTCTTTGACTCATACTGAGGATGATATTTAAGAGAAAAAATACAAATGTATCATTTATATATGGATTCTATAAATCTACCAGAGATGTTCATGCCAGCACTTCGGGTTCAGCATGAACGGTACTCTATTTTATAATGTCAGACATACAGGTTTTTCATTTCACTGCATTTTGTACTAATACTAAAGCCACCAATGTTTTCAATGCTGAAGACTTCAGAAAGATTGTTTCGGGACAGTTTATTGGAATTAAAATGGCAGAAAACATCCTGTTAATCTGTAATGCGTTGACTCTAGTGGTTATCAAATGCGCACAAGACGAGATGCTGCAAAGGTGTTTTTTTTCTATATTAAAAACCCTTGTTAAAAGCATCCCTCAAAATTCATGATCATCTCAAGTTCACAAGGAGCAGGGAAAGCCCTCGTGCCTGAGTGAACGACTCTCTCTTCTTCTTCAAATGTATGAATCTTTAACCACATCTGTAAGTAGATGATCTTGTCAGTCAAACCCCCAGAGGGCTCACATTAGTGTTCCTGTAGAAGTTTTCAATATTCTGTCATTGACTTTGAAGACCTGGATAGACTGGGCATGACACCACATGTGTAACTAAAGACATTTCTTTTTACTTTCTATGGAACTTCACTCACCTTTTTTTCTGTCCCTGTTGTCTTTATGAGAGAGAAAGATGCTGATATCCCTGATGATTTTTTTTTTTTTTTCCAATTGGCAGGAATTTTGATTTGACATTGGGTGTCTGTCATGTAAAGATGTAGGTATATCATTTATAAAAAATTTACAAAAAATTAAAATCATCTTTTTTATGTGGTCAGCATCTTCAACTAATTGTCCGTATTTGGATCAATGTTGAGGATTGTCTTTTTGCAATATCTGGAGAATAATTTGTGTCTGTCAAAACTGTATCTGTATCCTTTCATTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38612 lncRNA upstream 19754 15271644 ~ 15271905 (+) True G34061
TU38606 lncRNA upstream 55276 15236130 ~ 15236383 (+) True G34055
TU38421 lncRNA upstream 67745 15223661 ~ 15223914 (+) True G33896
TU38574 lncRNA upstream 131599 15154062 ~ 15160060 (+) True G34032
TU38575 lncRNA upstream 135146 15106736 ~ 15156513 (+) False G34032
TU38382 lncRNA downstream 121414 15419261 ~ 15425806 (+) True G33857
TU38646 lncRNA downstream 135321 15433168 ~ 15433373 (+) True G34090
TU38659 lncRNA downstream 183416 15481263 ~ 15481530 (+) True G34100
TU38660 lncRNA downstream 184073 15481920 ~ 15482315 (+) True G34101
TU38700 lncRNA downstream 258008 15555855 ~ 15556213 (+) True G34141
CI01000004_15277204_15286845.mRNA mRNA upstream 4672 15277204 ~ 15286987 (+) True CI01000004_15277204_15286845
CI01000004_15260416_15262090.mRNA mRNA upstream 29419 15260239 ~ 15262240 (+) True CI01000004_15260416_15262090
CI01000004_15237719_15253901.mRNA mRNA upstream 37501 15237719 ~ 15254158 (+) True CI01000004_15237719_15253901
CI01000004_15229290_15233374.mRNA mRNA upstream 57062 15228776 ~ 15234597 (+) True CI01000004_15229290_15233374
CI01000004_15200553_15209521.mRNA mRNA upstream 81835 15198242 ~ 15209824 (+) True CI01000004_15200553_15209521
CI01000004_15316323_15317231.mRNA mRNA downstream 18100 15315947 ~ 15317342 (+) True CI01000004_15316323_15317231
CI01000004_15325044_15326740.mRNA mRNA downstream 27197 15325044 ~ 15326787 (+) True CI01000004_15325044_15326740
CI01000004_15400244_15414139.mRNA mRNA downstream 102397 15400244 ~ 15414376 (+) True CI01000004_15400244_15414139
CI01000004_15444403_15453408.mRNA mRNA downstream 146556 15444403 ~ 15454177 (+) True CI01000004_15444403_15453408
CI01000004_15631508_15632389.mRNA mRNA downstream 333583 15631430 ~ 15632403 (+) True CI01000004_15631508_15632389
TU38554 other upstream 199690 15091244 ~ 15091969 (+) True CI01000004_15091390_15096502
TU37521 other upstream 1254759 14023547 ~ 14031127 (+) True G33092
TU36655 other upstream 2635948 12642754 ~ 12655711 (+) True G32314
TU36123 other upstream 3096512 12192130 ~ 12195147 (+) False G31865
TU35813 other upstream 3624081 11664773 ~ 11665473 (+) True G31611
TU38784 other downstream 641510 15939357 ~ 15939950 (+) True G34220
TU38340 other downstream 765568 16063415 ~ 16066464 (+) True G33815
TU39001 other downstream 1679481 16977328 ~ 17025469 (+) False G34400

Expression Profile