RNA id: TU32607


Basic Information

Item Value
RNA id TU32607
length 213
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G28835
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8368861 ~ 8369073 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAAGGCAGTATTTCCACCCAATTTTAACTACTTAAGAGTTTTAGAGGTTTTTAAAGGTTTATAACACCCAAATACTACTTTCATTCTTGCAATTAAACCTGGTTGCTACGAGCTGAATGTTGAGTAATTATTGTGACTAACTAGTATAATATAATAACCCATCAAGTAAAATAAGGAATCATGGTATAGCTTTTCAGTCACTACATGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32606 lncRNA upstream 2940 8365695 ~ 8365921 (+) True G28834
TU32591 lncRNA upstream 84764 8277202 ~ 8284097 (+) True G28819
TU32563 lncRNA upstream 335149 8028250 ~ 8033712 (+) False G28801
TU32564 lncRNA upstream 336791 8028250 ~ 8032070 (+) True G28801
TU32562 lncRNA upstream 342963 8025491 ~ 8025898 (+) True G28800
TU32618 lncRNA downstream 41653 8410726 ~ 8411220 (+) False G28843
TU32616 lncRNA downstream 41739 8410812 ~ 8411220 (+) True G28843
TU32623 lncRNA downstream 101672 8470745 ~ 8471884 (+) True G28848
TU32624 lncRNA downstream 158372 8527445 ~ 8527675 (+) True G28849
TU32631 lncRNA downstream 185159 8554232 ~ 8554563 (+) True G28855
CI01000004_08302613_08354790.mRNA mRNA upstream 14066 8302613 ~ 8354795 (+) True CI01000004_08302613_08354790
CI01000004_08252556_08257067.mRNA mRNA upstream 110768 8252394 ~ 8258093 (+) True CI01000004_08252556_08257067
CI01000004_08243282_08245264.mRNA mRNA upstream 123492 8242979 ~ 8245369 (+) True CI01000004_08243282_08245264
CI01000004_08200962_08208539.mRNA mRNA upstream 158157 8199371 ~ 8210704 (+) True CI01000004_08200962_08208539
CI01000004_08177656_08183324.mRNA mRNA upstream 185266 8177565 ~ 8183595 (+) True CI01000004_08177656_08183324
CI01000004_08382042_08402126.mRNA mRNA downstream 11399 8380472 ~ 8402514 (+) True CI01000004_08382042_08402126
CI01000004_08414451_08436256.mRNA mRNA downstream 45243 8414316 ~ 8436263 (+) False CI01000004_08414451_08436256
CI01000004_08458998_08503889.mRNA mRNA downstream 89925 8458998 ~ 8503992 (+) True CI01000004_08458998_08503889
CI01000004_08507941_08515797.mRNA mRNA downstream 138868 8507941 ~ 8516308 (+) True CI01000004_08507941_08515797
CI01000004_08518587_08521540.mRNA mRNA downstream 149389 8518462 ~ 8521661 (+) True CI01000004_08518587_08521540
TU32454 other upstream 712478 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 1794440 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1866774 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 2635860 5732589 ~ 5733001 (+) True G28165
TU31418 other upstream 2995058 5372825 ~ 5373803 (+) True G27805
TU32590 other downstream 64632 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 230162 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 607365 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 607365 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2128303 10497376 ~ 10497788 (+) True G30797

Expression Profile