RNA id: TU32640


Basic Information

Item Value
RNA id TU32640
length 367
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28862
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8603095 ~ 8603461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGGATCACTTTATGAGGTAGGATATTGTCATTGGTTGTAGTCAAAGGGGTAAAATTTGGCTGGTTAACAAGTAAGCCCCTGCTGTTAGATTTAACACTATCCGGTTGAATCTTTCTGTATTGACAACCTTTTGCAAAGATTTCTGCTTCACTTCAGTCTGGTCTAAAACAAAATGTTTTGTTTAGATTTTTACTTTTTAACCTCTACATGTCACCTTTTTGTTTCCCTTTACTTGACACCCAACTCAGGATTGGTAAAGAAATAATTTGGTCAATTGATTTTCCCAGAGTCACATTTACAACTCATAGTGGGCAATGGGCAGGACTGGAGGTAGCAGCTCCCAAACACATCATGATCAATGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32639 lncRNA upstream 252 8602623 ~ 8602843 (+) True G28861
TU32636 lncRNA upstream 5312 8595852 ~ 8597783 (+) True G28858
TU32631 lncRNA upstream 48532 8554232 ~ 8554563 (+) True G28855
TU32624 lncRNA upstream 75420 8527445 ~ 8527675 (+) True G28849
TU32623 lncRNA upstream 131211 8470745 ~ 8471884 (+) True G28848
TU32641 lncRNA downstream 144 8603605 ~ 8603927 (+) True G28863
TU32645 lncRNA downstream 2853 8606314 ~ 8606585 (+) True G28867
TU32650 lncRNA downstream 12760 8616221 ~ 8616535 (+) True G28872
TU32683 lncRNA downstream 69760 8673221 ~ 8673463 (+) True G28904
TU32684 lncRNA downstream 70297 8673758 ~ 8674201 (+) True G28905
CI01000004_08573940_08586930.mRNA mRNA upstream 15925 8572741 ~ 8587170 (+) True CI01000004_08573940_08586930
CI01000004_08518587_08521540.mRNA mRNA upstream 81434 8518462 ~ 8521661 (+) True CI01000004_08518587_08521540
CI01000004_08507941_08515797.mRNA mRNA upstream 86787 8507941 ~ 8516308 (+) True CI01000004_08507941_08515797
CI01000004_08458998_08503889.mRNA mRNA upstream 99103 8458998 ~ 8503992 (+) True CI01000004_08458998_08503889
CI01000004_08414451_08436256.mRNA mRNA upstream 166832 8414316 ~ 8436263 (+) False CI01000004_08414451_08436256
CI01000004_08618566_08669147.mRNA mRNA downstream 15105 8618566 ~ 8669147 (+) True CI01000004_08618566_08669147
CI01000004_08693419_08703448.mRNA mRNA downstream 89958 8693419 ~ 8704156 (+) True CI01000004_08693419_08703448
CI01000004_08730011_08731219.mRNA mRNA downstream 126550 8730011 ~ 8732509 (+) True CI01000004_08730011_08731219
CI01000004_08736175_08742487.mRNA mRNA downstream 132714 8736175 ~ 8744387 (+) True CI01000004_08736175_08742487
CI01000004_08746864_08765484.mRNA mRNA downstream 143023 8746484 ~ 8765905 (+) True CI01000004_08746864_08765484
TU32637 other upstream 3492 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 151868 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 946712 7654772 ~ 7654879 (+) True G28706
TU32079 other upstream 2028674 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 2101008 6470028 ~ 6502087 (+) True G28302
TU32792 other downstream 372977 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 372977 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 1893915 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 3033790 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 3061312 11664773 ~ 11665473 (+) False G31611

Expression Profile