RNA id: TU34105


Basic Information

Item Value
RNA id TU34105
length 225
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G30131
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9310597 ~ 9310821 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGGATAAAATTATTGACTACAGGAGGACTTTAAAAATTTGAGTTAATGCAATGAAGACGATTGGTTAAATCAACAAAAACTCCAAATTGTATGCTATATGAACTACATTAATTATCTAAGTTGATTTGACAAAAGAAAATGTTGTGATAACAAATCATGAAAATAATTTTTTACAGTGTATAAGTTCAAAAACATCAGTATCTCACAGAAGTGAGTACACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34104 lncRNA upstream 36 9310359 ~ 9310561 (+) True G30130
TU34103 lncRNA upstream 743 9308160 ~ 9309854 (+) True G30129
TU34094 lncRNA upstream 12941 9297256 ~ 9297656 (+) True G30120
TU32780 lncRNA upstream 98983 9209107 ~ 9211614 (+) True G28980
TU32813 lncRNA upstream 268351 9041084 ~ 9042246 (+) True G29010
TU34082 lncRNA downstream 12737 9323558 ~ 9326704 (+) True G30111
TU34138 lncRNA downstream 101408 9412229 ~ 9412561 (+) True G30163
TU34145 lncRNA downstream 107724 9418545 ~ 9418760 (+) True G30169
TU34148 lncRNA downstream 112824 9423645 ~ 9423845 (+) True G30172
TU34153 lncRNA downstream 115294 9426115 ~ 9426347 (+) True G30177
CI01000004_09224465_09224950.mRNA mRNA upstream 85641 9222479 ~ 9224956 (+) True CI01000004_09224465_09224950
CI01000004_09185502_09218621.mRNA mRNA upstream 91955 9184835 ~ 9218642 (+) True CI01000004_09185502_09218621
CI01000004_09173580_09175411.mRNA mRNA upstream 134940 9171752 ~ 9175657 (+) True CI01000004_09173580_09175411
CI01000004_09002274_09004879.mRNA mRNA upstream 305574 9002042 ~ 9005023 (+) True CI01000004_09002274_09004879
CI01000004_08996083_08997863.mRNA mRNA upstream 312734 8996083 ~ 8997863 (+) True CI01000004_08996083_08997863
CI01000004_09340611_09363638.mRNA mRNA downstream 28719 9339540 ~ 9364254 (+) True CI01000004_09340611_09363638
CI01000004_09371639_09375356.mRNA mRNA downstream 60818 9371639 ~ 9376005 (+) True CI01000004_09371639_09375356
CI01000004_09378220_09381425.mRNA mRNA downstream 66983 9377804 ~ 9381823 (+) True CI01000004_09378220_09381425
CI01000004_09383327_09385444.mRNA mRNA downstream 72506 9383327 ~ 9385494 (+) True CI01000004_09383327_09385444
CI01000004_09429758_09474615.mRNA mRNA downstream 118937 9429758 ~ 9474615 (+) True CI01000004_09429758_09474615
TU32792 other upstream 329613 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other upstream 329613 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU32637 other upstream 710994 8599235 ~ 8599603 (+) True G28859
TU32590 other upstream 859370 8439958 ~ 8451227 (+) True G28818
TU32454 other upstream 1654214 7654772 ~ 7654879 (+) True G28706
TU34813 other downstream 1186555 10497376 ~ 10497788 (+) True G30797
TU35938 other downstream 2326430 11637251 ~ 11642400 (+) True G31710
TU35811 other downstream 2353952 11664773 ~ 11665473 (+) False G31611
TU35813 other downstream 2353952 11664773 ~ 11665473 (+) True G31611
TU36123 other downstream 2881309 12192130 ~ 12195147 (+) False G31865

Expression Profile