RNA id: TCONS_00000112


Basic Information

Item Value
RNA id TCONS_00000112
length 3890
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_000055
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 4101741 ~ 4154332 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGGCTTTTCCGTGCCAAAGGAAGCCCTTTTGAGAAGTCCAGGCGTCCTATTTTGTGCTGCAAAACTGGGTGGTTTTGTTTGATCCACAAAGCACTGATAACTTGGCCAAGTGGAGCTACGGAGACTCACAGCGCTGCGTAATTTGGATgcacagaagaaataaaaaaaaaatgctggccagGATTGTTTTCATTTGCTCCTTCTTTGCTGGTGCTAGTTTTGGAGATACTGAGTCCAAGGCGTCATACGGCGGAGCTTGCAAATCTTTGTGCACCTGTGAGGAGAAAGATGGAGTACTGTACGTGAACTGTGAGGAGAGAAACATAAGCAGAATCTCGGATGTGAAAGTACCATCAGATGTACCTTTTCATCTAAATTTATACAAAAATGACTTGGTGGAGTTACTTGCAGAGGACGTGGAGGCTTTCAAGAATGCCATTACCTTACATCTCGGTGCGAACAGCATACAGGAGCTCGAACCTGGCGTGTTTAGTGCACTGGGATCCCTGAAAAAGCTGCACATAAACAGCAATTTCCTGGTTATGTTGAAGGAGGACACATTCCAGGGGTTGGTAAATTTGGAGTACCTTCAGGCTGACACCAACTTCATCCGAGTGGTTGAGCCTGGGGCTTTCAGCAAGCTCATCCGTCTCAAAGTTCTGATCCTCAATGACAACTCAATCGACTTCCTTCCGAGCAACATTTTCCGCTTTGTGCCTCTGACACATTTGGATCTGCGCGGGAATAAGCTGCAGACACTGCCATACGTAGGTTTCCTGGAGCATATCGGTCGTATCATGGAGCTCCTGTTGGAGGATAACGACTGGGTGTGCAATTGCGAAATCTTGCATTTGAAGGTGTGGATTGAGAACATGCGAGCGCAGTCGTCTATCGGCGAGGTGGTCTGCAACAAGCCTGAAAATCTCAAGGGCACCTCGTTGGCCAGGGTCAAAAGAGATTCGCTTTGCCCCTCCCATGCTGACATCAATCTCGAAGAGCCATTACAGTCTCAAGACATGGTTGTCACTCCATCCACCAAGGTTGTCCAGATACCGAATGCCAAAGATGACGCAAAGAAACCCACCCCTGCAAACGGCCCCGAGACAGTCTGTGGATCAGTGTGCTCTTGTTACCCAAGTGCGGGTTTTTTAATGCACTGCGAAAACCGAGGCATTCAAAGGATATCGGATATAGGCATTCTCGAACAAAGCCCAACCAAGCTGTTTTTGTCTGGAAATATGATACAACGACTTTACAAGTATGATTTTGTGACATACGACACTTTGGATGTGCTTAATTTGTCCAACAACCAGATCGACTACATCGACAACGAAACCTTCCTGAGCTTGAGCAATCTAAAAAAGCTGCAACTGAATGGAAACAGGATAGAGAGAATCTCTGCAACTATGTTTCTCGGTCTTCACAACCTGGAGTACCTGTACTTGGAGTATAATGTCATCAAAGAGATTGAGGCGGGATCGTTTAATCCTTTGACAAATCTGAGACTCCTGTTCCTGAACAACAATCTACTCAACACACTCCCAGCGCAAATATTCCGCAATGTGCCCTTGGTGATGTTAAACCTAAGGAAAAACGTCTTTACGCACTTACCGGTGAGTAATGCCTTGGAGCAGCTCAGTTTTCTGGAGCAAATTTATCTTGAGGACAATCCCTGGGACTGCACTTGTGATTTGGTCAGCCTCAAACAGTGGGTGGAAAGGCTTACCAGGGATACTGTGGTGGGAACTATCTTATGCAAAACTCCACAAAAGCTGGCCGCTGTTGATGTTAGAAACCTGAAACATGACATACTCTGTCCTGGATTAGTCACTTATAAGTCCATAGGCAAACACACGGAGGATGTTTTTTTAGTCACGCCTGCTCCGCAAGGTGGCACCAGCAGCTTCTTCGGGTCTCTGAAAGAAGTGCCACTTTCAGTGCTCATCCTCTGCCTTCTCATCCTATTCCTGACCGTCATTTTCTGTTCTGCTGGGATAGTTGTGTTTGTGCTACACCGTCGGCGGAGGCAAGCCAAAAAGAAACAAGCTGAAGAGCAACCTCGCGAGAGCAGTCCCATCCACCTGCATTACAGCATGTACGGCCAGAAGACCACCCACCATGTAACCGAAAGGCAAGGACCTGTCATGTACGACGAACCATCGCGTAGCCCCATTGTTCAGGTTTGCCGAAACCCTAGTTACTGCTCCCAGCACAAAGAATACGAGCTAGGCGACTACGATAGTGAGAAAGCCAAGCATATCTGCCACAGTCTTCTTGATAAGGGCAATGAATCCCTGCCCAACGTGAAGTTCAGGGCCGTTTCCGACTATCCCGCTGAGTTTGTGGGTTTGGGAGATACCAGTTCCTTGTACAAGAGCATCTTAGAAAGGGAGCGGGAACTCCAACAGCTCAGCCTCACCGAATACCTCAGGAAAAACATTTCACAGCTACAACCAGCTGTGGACATGCAAGTCCCAAACCATCACAAAGAGCTGAAGCTCATGGAGACTCTCGTTTATACAAGGCCTCGGAAAGTTATGGTGGAACAGACTAAAAACGAGTACTTTGAACTCAAAGCCAACTTACATGCTGAACCAGACTATTTAGAAGTCTTAGAGCATCAAACGACTTTCAACTGAGATAAGTACACTGTATACTTTGATACTCCAAGTGCCTTGAGAGTTTATTCTGGGTTATAGAGAGATATAACACAACAAATCCAGAGTAGAGGCGATTCTCACGATGCAATCATTCGATGTGGACACGATGTCTATTTTTCAGGTGGACCTTTGCTATCGGACATGCAGAAAGAGCCACAGAGTTACGTCTTCGGACGCGATTGGCTTTGATAGCAGCGTATTTGTTGTGCGTTGTGGTTAATGCATTCTCTTTATGTTTACTACACAGTAGAGAGACTAGCATAGATTCACTTCACATTTCTATCTCTGTATCTCTAATGTACGTGGCAGATCTTTTAACTCTGTAGCAAGGGAAGAAAAcatgttttctttcattttttttttctgtcagacagAACATTTATGGTTAGTTAAAACATTCCCTGATTTGCTAAGCTTTGAATTAAACATGCCCAACACAGTTTTCgtgcattaaatattaaataatgggGGTACTTGGATCTGAAGATGCTGGAAAattgcatttattaataaataaggcGCCATCAACAGCAAGCGGCTTGCCAAGCGGCTATTGTTTTGACCCTAAGGTCAGACTTTATGAGTGGGCTCATTTATCGTGTCTGAAATTGCCGTCTCACCTGGAATTCTCAACACGCCCGGAGAGTTTGTTCACAAATTATGTCATACAGACCCACTTGCTCATTACCTCCACTGTTTCTGATATGGACAAAAACTCTGCTGGGCTTCTTTCTCGGAGAAAATGAAAAGAATTGCACTACTTAAAATACCATTTGAAAGTGGTTGATGACAATCACGTTGTGAGTCCGCACAGTCTATGCCATTTTTCGTTTCCAATTGGAAAACTGAGTAGTGTAGCTTCTGGTTTGTATATTAATGTTGTTTGAAGTTCCTTTCGAAAACACAAATCATATCCGACTATTTTCTTTCAGCATGACAATTATGCAGGGTGTTTTATCTTCATCAACTGGCTGGAGAAGAAAAGAATttctatatctatatatgtacATGTATAGAGAAAATATGCACACAGACTATTGTGTTAAGCCTTGAAATGTTTTACTGTATGGAAGAGCACCATAGCTTTATTTTGTACAAGTGTGGATGAGAGTTATTTATTCTGTATATTTGtacataattttacatttatatgtttGTGTGCCTTTAACGTGGTACCAATTAAGCTGtacataacaaaataataataaaaatatatataataaattg

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2816 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in high myopia-sensorineural deafness syndrome. Orthologous to human SLITRK6 (SLIT and NTRK like family member 6).

Ensembl:

ensembl_id ENSDART00000163793

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003016 lncRNA upstream 381138 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000101 lncRNA upstream 1802195 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00002808 lncRNA upstream 2078096 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00003015 lncRNA upstream 2096109 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00000077 lncRNA upstream 2201898 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000113 lncRNA downstream 443728 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 747128 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00003018 lncRNA downstream 1157147 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00003017 lncRNA downstream 1157147 5311479 ~ 5313595 (+) True XLOC_000059
TCONS_00003019 lncRNA downstream 1552638 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00000110 mRNA upstream 1065722 2712956 ~ 3036019 (+) True XLOC_000052
TCONS_00000106 mRNA upstream 1657531 2301974 ~ 2444210 (+) False XLOC_000050
TCONS_00000109 mRNA upstream 1657969 2431956 ~ 2443772 (+) True XLOC_000050
TCONS_00000105 mRNA upstream 1692615 2301974 ~ 2409126 (+) False XLOC_000050
TCONS_00000103 mRNA upstream 1706768 2301961 ~ 2394973 (+) False XLOC_000050
TCONS_00000114 mRNA downstream 1119149 5273481 ~ 5277583 (+) False XLOC_000058
TCONS_00000115 mRNA downstream 1121479 5275811 ~ 5277577 (+) True XLOC_000058
TCONS_00000116 mRNA downstream 1248144 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000118 mRNA downstream 1268107 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA downstream 1268244 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000111 other upstream 341707 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000104 other upstream 1660058 2301972 ~ 2441683 (+) False XLOC_000050
TCONS_00000108 other upstream 1698517 2403103 ~ 2403224 (+) True XLOC_000051
TCONS_00000102 other upstream 1799118 2301958 ~ 2302623 (+) False XLOC_000050
TCONS_00000100 other upstream 1802195 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000117 other downstream 1248202 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000120 other downstream 1283058 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other downstream 1284411 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000123 other downstream 1342953 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000134 other downstream 2028010 6182342 ~ 6185532 (+) False XLOC_000067

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_01855614_01858092.mRNA True 3090 mRNA 0.44 1 CI01000299 1855614 ~ 1858703 (+)