RNA id: CI01000009_01892219_01893628.mRNA



Basic Information


Item Value
RNA id CI01000009_01892219_01893628.mRNA
length 797
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000009_01892219_01893628
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1892219 ~ 1893754 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGGATTCAGGCTACAGCGAAGCAAAATAATGCAACATCAAGCTTACCAACCTGTTTTGCCCTGTGTTAATAAATATCTGCAATACAGATGGGACAAAAACTGCTATGAGATGCACAGGAGCAAGGTTAAATCCGCAAAACCAACTATCAACACAACTCCCCCGAAAACCTATGGCCATCTACTTGTCAAGTTTAAGAAAAGACAGCTTGAAGAAGAACGGGTTTCGAGAATCGAAAGAGAAAATCAGATGCTTCTTGATAAAATGTCCCATATAATGCAGACCAGCGGGGGAGTTGACTGTAGACATGACTATGTAAAGAAAAGTCTTGGCTCAGAGAAAAGACAGCTGGAGCTGCTTCGCATCGCCAAAGAGAATCAGTGGATCCTTCAGCGTTTGTCCACCTGCAGGCCGCGTTACAGCGTTCACGTGTGGCACGAGCAGTGGCTTAAAAACCTTGAGCTCATGGAGAATATAGGGAGATATCCGCGTCTGTACACCGCACAGAGATCCTCCTTGCCACCAATTTCAGCAGACAGACATGGGAAGGTAGAGAACAAGAAATATGCAAGAAATGAGGATGAACGGTCTGCTAACACTAGGAATGAGATGAAGAAAAATGATGAGAAGACAAAATCTGAATACAAAGTTACATCTGAAGACGAAGCGTAATTCATGCAAGAGTGTAAATCTTAAAGACTTAATTCGTAAAGATGTTTTCTATATGAAAATAGAATTAAATTTTCTTATTAAATTAAGTGATGCTACTGCTTTTGAGCAAGTTTAATGATTTAGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58323 lncRNA upstream 11309 1880711 ~ 1880910 (+) True G51198
TU58322 lncRNA upstream 11862 1880111 ~ 1880357 (+) True G51197
TU58321 lncRNA upstream 13371 1878637 ~ 1878848 (+) True G51196
TU58320 lncRNA upstream 16011 1875982 ~ 1876208 (+) True G51195
TU58319 lncRNA upstream 22364 1869642 ~ 1869855 (+) True G51194
TU58344 lncRNA downstream 59387 1953141 ~ 1953363 (+) True G51216
TU58297 lncRNA downstream 65506 1959260 ~ 1960717 (+) True G51175
TU58359 lncRNA downstream 130355 2024109 ~ 2024459 (+) True G51228
TU58309 lncRNA downstream 144715 2038469 ~ 2045644 (+) True G51185
TU58369 lncRNA downstream 205524 2099278 ~ 2116721 (+) True G51238
CI01000009_01733394_01738937.mRNA mRNA upstream 152751 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01692563_01725364.mRNA mRNA upstream 166855 1692563 ~ 1725364 (+) True CI01000009_01692563_01725364
CI01000009_01570544_01595199.mRNA mRNA upstream 296753 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01454610_01484907.mRNA mRNA upstream 406391 1454224 ~ 1485828 (+) False CI01000009_01454610_01484907
CI01000009_01431700_01434463.mRNA mRNA upstream 457677 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01897343_01919208.mRNA mRNA downstream 3589 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
CI01000009_01966898_01976924.mRNA mRNA downstream 73144 1966898 ~ 1977734 (+) True CI01000009_01966898_01976924
CI01000009_01990700_01991267.mRNA mRNA downstream 96946 1990700 ~ 1991387 (+) True CI01000009_01990700_01991267
CI01000009_01993176_01999494.mRNA mRNA downstream 99422 1993176 ~ 1999873 (+) True CI01000009_01993176_01999494
CI01000009_02028234_02100154.mRNA mRNA downstream 134480 2028234 ~ 2100154 (+) True CI01000009_02028234_02100154
TU58233 other upstream 210253 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 453864 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1121986 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1796432 94202 ~ 94283 (+) True G50472
TU58306 other downstream 481 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 361345 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1168279 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1309018 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 1309018 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060

Expression Profile