RNA id: TU58749



Basic Information


Item Value
RNA id TU58749
length 1857
RNA type TUCP
GC content 0.33
exon number 5
gene id CI01000009_03202999_03207060
representative False

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3202207 ~ 3208984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACTGACACTTTACAGGACAACATACCAGAAAACTGCATTAGCAAGGTCGAGAGTAGGACAATAACGTAGACTTTGTACTTTATGCTTGTCCAAAGGTCTTGTTTTCTTAACTACGGGCTCTTGCCTTTTGGAAACACCACGGGTCAAAAGCAGTAGGGTGCTTTGCACGTCCTAAGCGGCATTTTCGTGCGTGCAGTGGTAGCATTTAGCTTGTTTGGAAGTCATCATGGCTATGGTGGGGCTGAGAGCTTCTTACCACAGAATCCTCGACAGGATCGAGCATATGCTGCCGGCTAAACTGAGACCTGTTTATAACCACCCTGCAGGTCCAAAGACTGTGTTTTTCTGGGCTCCAATGTTTAAATGGGGCCTGGTCATGGCTGGCTTAGCAGACATGGCACGTCCAGCAGAGAAACTCAGTACCTCCCAATCTTTTGTGCTGACAGCCACAGGTCTTATTTGGTCCAGATATTCCCTGGTTATTATCCCAAAGAACTGGAATCTATTTGCTGTAAACTTCTTTGTAGGAGGTGCAGGAGGATCACAGCTCTACAGAATATGGAAGTATAACAGGGAACAGAAGGCAAAGGAAAAAGAAGCACAGGCTTGATACCAGTGCTGTGTAAAGTGCATCCAGAGGACCGAAAGGGACTGTCCTCAACTGGTACCCCAGAAACTTCCCCTCCAATCACCAGTCATCCAGTAGAGCCTCCAGACACTTTCTTCATGAATAGAGATCATCAGATTGTTTGAGTTCAGGTCATTGTCCAGTGCCACTAGTACCTATAGCAACAATTATTACGGTTGTTAAAAACGCACAAAATGTTACATATTCATATTAGTATGATTGTGCATTCTTGTTTGAAATGCATCTTGATAAAGGTGCTTTCCATCCAACATGAGTTACCATCATAATTCTTACTATCGAGTGAATTTCTTCACTCAGCCTCTGTCATGCTATTAACGGAATGTCTCCAAATAAATTTTAGAAAAGTCTTTCATTATTTGTATTTCTTAGGAAATATTTATTAAACAGCTGTAATACTTTTTTATTATTATTTTATTTTGATTCCACAGTCATATCCATAACATGAAATTGTTTTAGTTGAAACTCATACATTATGAAAAATAACCTGAACTGCATTGTAATATTGGAATTTTTTAATTAACTTAAAAATAAAGTAACATTAAAGTCAGATTTACTAAAAGCGCCTTGCTCTTACAATCTAGTGTGCTGTTAGATGTTCACATGCATTAATCTCTCTAGTTATTCACCTGTCTTGCATTATAAATAAAGTATAACCTTTTACTCGTTATTGGCAAGAAATGAGTATCAGAATATAGTACTACTCAAACATTTTCTGCTATGTTAATTCTGCTCATGTTATGCAAATTTTGTGTATGCTTGCAATGCAAGATGCTACTACATTTTGCCAGAATAAGCAGCATACAACCAGAGCACATAAATCCCACAATAAAAAGCATGTAACTTTACCATTTCATTTTCAGTGACGCATATGAACTGGAGGTGTTATCAACTGTGATTTTTCACACATGATTTCTGACTCTTTAGAAGCCAAATTTATTTTAATAAACCATTTCCCAGATGATATTTAAACACCACTTCCTGAATTAAAAATGTGGTAAGGTCACATTTGATAACAATCTTGCATACTGCTATTTGAAATGCTTGCTGTTTCACATATGTCAAAACTAAAATAGCAGGAAGTATATCTTTTCGTGACCGTACACTGCTGACCCCGTGTGGTACTACAATAAACTGCATTGTGTTCAGTAGAATGAGAATGAGATCTACGTCCACAATGCCTCGCTTACATTTAATTTGCACATATAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58800 lncRNA upstream 53340 3119464 ~ 3149432 (+) True G51610
TU58740 lncRNA upstream 83752 3118793 ~ 3119020 (+) True G51559
TU58739 lncRNA upstream 84416 3117858 ~ 3118356 (+) True G51558
TU58732 lncRNA upstream 93860 3108463 ~ 3108912 (+) True G51552
TU58734 lncRNA upstream 94761 3107726 ~ 3108011 (+) True G51553
TU58773 lncRNA downstream 12707 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58779 lncRNA downstream 14453 3222759 ~ 3223865 (+) True G51589
TU58771 lncRNA downstream 52891 3261197 ~ 3262009 (+) True G51581
TU58775 lncRNA downstream 54030 3262336 ~ 3262959 (+) True G51585
TU58759 lncRNA downstream 79022 3287328 ~ 3290810 (+) True G51569
CI01000009_03164135_03169470.mRNA mRNA upstream 32632 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03145417_03159851.mRNA mRNA upstream 42858 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03123137_03137452.mRNA mRNA upstream 64461 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_02918681_02973307.mRNA mRNA upstream 228820 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_02799246_02827589.mRNA mRNA upstream 375132 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_03211734_03220047.mRNA mRNA downstream 3428 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
CI01000009_03276572_03283625.mRNA mRNA downstream 68266 3276572 ~ 3284006 (+) True CI01000009_03276572_03283625
CI01000009_03301176_03305406.mRNA mRNA downstream 92870 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
CI01000009_03313112_03329470.mRNA mRNA downstream 104806 3313112 ~ 3329510 (+) True CI01000009_03313112_03329470
CI01000009_03330968_03333405.mRNA mRNA downstream 122279 3330585 ~ 3333453 (+) True CI01000009_03330968_03333405
TU58708 other upstream 140185 3062033 ~ 3062587 (+) True G51529
TU58428 other upstream 852286 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1301346 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1520806 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1764417 1422847 ~ 1438355 (+) True G50926
TU60796 other downstream 2313936 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 2326939 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2651996 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 3037258 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5920994 9129300 ~ 9130286 (+) True G56100

Expression Profile