RNA id: CI01000009_03276572_03283625.mRNA


Basic Information

Item Value
RNA id CI01000009_03276572_03283625.mRNA
length 2277
RNA type mRNA
GC content 0.54
exon number 11
gene id CI01000009_03276572_03283625
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3276572 ~ 3284006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGACTTTGACTCCAGCGCAGCAGCAGTTATTGCTGCAGCAGGCTCAGGCTCAGCTCCTGGCAGCAGCGGTGCAGCATTCAGCCGGCCAGCAGAGTAGCACTTCAGGAGCCAGCATCTCTGCCTCCGCTGCCACCCCCATCACCCTCTCTCAACCCATTCAGATCACACCTCAGTTACAGCAGCTGCAACAGCAGCAGAACCTCAACCTGCAGCAGTTTGTGCTGGTCCAGCCGGGCCACCCCATCGCAACACAGCTGCAGCCCGCGCAGTTTATCATCTCGCAGACACCACAGGGCCAGCAGAGTCTCCTGCAAGCCCAGAACCTTCTAACACAACTACCTCAAAGCCAAGCCAACCTCCTGCAGACCCAGCCAAGCATCACACTTGCCACACAGCCTGCGACACCCACACGCACGATAGCAGCGACCCCCATCCAATCCCTCGCTCACAGCCAGACGACACCAAAGCACATCGACACACCCAGCCTGGAGGAGCCCAGCGACCTGGAGGAGCTAGAGCAGTTTGCCAAGACCTTCAAACAGAGACGCATCAAACTGGGCTTCACGCAGGGGGATGTTGGCCTTGCCATGGGAAAACTTTATGGAAATGACTTCAGCCAAACCACCATTTCTCGCTTTGAGGCCTTGAACCTGAGCTTTAAAAACATGTGCAAACTGAAGCCTCTGCTTGAAAAATGGCTCAATGATGCAGAGAACCAGACGTCTGACCAGGCCCTGTCCAGTCCCAGCTCTCTTGGCTCGCCTGGGCTGGGCTTGGAGGGCCTGAACCGCCGCCGCAAGAAGAGGACCAGCATCGAGACCAACATCAGAGTGGCCTTAGAAAAGAGCTTTCTGGAGGGCGTTTCTTGTGCCTTTGCCCTTTTCAAGCAGAACCAAAAACCTACCTCTGAGGAGATCACCATGATCGCAGACCAGCTCAACATGGAGAAGGAGGTGATCCGAGTATGGTTCTGTAACCGCAGACAGAAAGAGAAGAGGATCAACCCGCCCAGCAGTGGCAGCATCGCCAGCACCCCTATCAAAGCAATCTTTCCACCCACCACACCTCTGTCACCAAGTACAGCCAGTCTTGTGACCAGTAACACACCGACTACTATGACTGTAAACCCAGTTATGTCTCTCACCAGCACTAGTGTCTCCAACGTCGGTTTCACTGGCACAACTATTGGCTCGGCTACTAACACTGCATCGGTCATCTCCACTGCACCTGTGGTCACCACCGCAGCATCCTCTCCTTCGCTCAGCCCTTCCCCCAGCGCAGTGCAGACGTCCTCCGCAGAGCAGGCTTCAGCTCAGGAGACGGTGACGGCAGTAAGTCAGGCACCTTCCTCTCTAGCGTCCACTTTGGGCACTGGGCAGGTGATGGTGGCGGCACCCAGCCTTTCGGCTGCTCTGCAAGGAGCCGCCCAGCTGCCTACCAGCGCCAGCATCGCTGCCATGGCTGCAGCCGCTGGCCTCAATCCTGGGCTCATGGCATCCTCACAGTTCACTCCTGGCGGAGCTCTTCTTAGTTTGGCACCAGGTGGTCTCGGAAGCGCTTTGAGTCCAGCACTGATGAGCAACAGCACCTTGGCCACAATCCAAGCTCTGGCATCTGGTGGCACTCTGCCCATTACATCTCTGGACGGGAGCGGGAACTTTCTGTTTGCCAACACCAGCGCTGGCAGTACCCCTAACCTCGTGACGGCACCGCTCTTTCTGAACCCTCAGAACTTGTCACTGCTTGCCAGTAACCCTGTCAGCCTAGTGTCTGCGGGAGGGGCTGCGGGTGCCGGAGCCCTTAACCTGCACATCACCGCCGATGCCCACCAGAGCGCTGTTACTACGGCAACTATGCCCGCCTCCACCATCACCACGGCCTCTAAGGCCCAGTGAAAGCTTAACCCACTCCTCTCCTCTTCTAGACCCCTTTCTTTAATCTCTTGCTACCACCAAAAACAAACCCACTAAAAAGGATTTAATGTTGTTTTAACGTTATTTTAATGTTTAAGTTTGTATGTTCTAACTTTACACATATCTTTTACACATTACTCCACGATGTTTGGACCTCCATTGACGGTTTGACTTCAAACAAATCAACAATAAGCGAATGTTAGCGTCACCACAGAGCTTGCATCAGGAGAGCAGAAACCTCCCTGGACATTGTGCCAAGTCTCTGTGTGATGCAAAAGCATATTCGTTTCAGCGAACTCACTCTTTCTCCCATTTTCACATGATACCTCTACTTCAGAGGTACTTCTGAAATGCTTTTAACCA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58775 lncRNA upstream 13613 3262336 ~ 3262959 (+) True G51585
TU58771 lncRNA upstream 14563 3261197 ~ 3262009 (+) True G51581
TU58779 lncRNA upstream 52707 3222759 ~ 3223865 (+) True G51589
TU58773 lncRNA upstream 54275 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58800 lncRNA upstream 127140 3119464 ~ 3149432 (+) True G51610
TU58759 lncRNA downstream 3322 3287328 ~ 3290810 (+) True G51569
TU58827 lncRNA downstream 24520 3308526 ~ 3308759 (+) True G51637
TU58828 lncRNA downstream 25072 3309078 ~ 3309537 (+) True G51638
TU58829 lncRNA downstream 26948 3310954 ~ 3311469 (+) True G51639
TU58849 lncRNA downstream 143560 3427566 ~ 3427773 (+) True G51659
CI01000009_03211734_03220047.mRNA mRNA upstream 55265 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
CI01000009_03202999_03207060.mRNA mRNA upstream 69144 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03164135_03169470.mRNA mRNA upstream 106432 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03145417_03159851.mRNA mRNA upstream 116658 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03123137_03137452.mRNA mRNA upstream 138261 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03301176_03305406.mRNA mRNA downstream 17170 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
CI01000009_03313112_03329470.mRNA mRNA downstream 29106 3313112 ~ 3329510 (+) True CI01000009_03313112_03329470
CI01000009_03330968_03333405.mRNA mRNA downstream 46579 3330585 ~ 3333453 (+) True CI01000009_03330968_03333405
CI01000009_03335503_03355421.mRNA mRNA downstream 51497 3335503 ~ 3355426 (+) True CI01000009_03335503_03355421
CI01000009_03466999_03473248.mRNA mRNA downstream 182847 3466853 ~ 3473414 (+) True CI01000009_03466999_03473248
TU58746 other upstream 67588 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 68049 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 68266 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 68648 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 68648 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 2238236 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 2251239 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2576296 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2961558 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5845294 9129300 ~ 9130286 (+) True G56100

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073374 False 5100 mRNA 0.46 13 NC_007120.7 34319333 ~ 34352617 (+)
bowfin (Amia calva) AMCG00014423 True 2052 mRNA 0.54 15 CM030128.1 13655238 ~ 13689188 (+)