RNA id: CI01000009_03668956_03672426.mRNA



Basic Information


Item Value
RNA id CI01000009_03668956_03672426.mRNA
length 1528
RNA type mRNA
GC content 0.45
exon number 6
gene id CI01000009_03668956_03672426
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3668792 ~ 3672426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTCTGCCAGTCCACCATTTCAGGAGGACAAGCTGCCATTTAGAGATCAGCCTTTTGATGATGTGGTGAAGGTGGATGTTTTACCAGTGGTTAAAAAAGAACCAATAGTACAGAACACAGAAGAAGAACAAGGTCCTCTGATGCAGGATGAACCTGTTGCAGATGTGGTGAAGCCTGATTCAGTGTTGCTGGAGCCAGAGACAACAGAGGAACACAGAGTAAGTGAAAAGACATCAGTGATGGTGGAGGAACCTGTGCTAAAGGCAGATAATCTGACACCAGAGACAGAACTAGAGCCTGAGCCGGAAATAGTTGCCATTCAGATGAACGGAAACAACGTACCTGTGCAGGAACCTGTGCCAGAGGCAGATAATCTGACACCAGAGACACCAGAGACAGAACTGGAGCCTGAGCTGGAAATAGATGCCAGTCAGATGAAAAGAGACAACGTACCTGCGGAGGAACCTGTGCTAGAGGCAGATAGTCAGACACCAGAGACAGAACTAGAGACTGAGCTGGAAATAGATGCCAGTCAGATGAACAGAGACAACGTACCTGCGGAGGAACCTGTGCTAGAGGCAGATAATCAGACACCAGAGACAGAACTAGAGCCTGAGCTGGAAATAGATGCCAGTCAGATGAACAGAAACGTACCTGCGGAGGAACCTGTGCTAGAGGCAGATAATCAGACACCAGAGACAGAACTAGAGACTGAGCTGGAAATAGATGCCAAGACACCAGAGACAGAACTAGAACCTGAACTGGAAATAGATGCCATTGAGATGAACACAAACAACCAACCTGTGGAGGAACCTGTAGTAGAGATGGAGTCTGTAGATGAGATGGTGGTGGAATCTGAAAAAGAAGAAAATTTATTAGAGGAGCCTACACTTGAGGGTGACTATATTGTGGTTGAAGATCCAGAAGAAGTAATGGAACCAGGGAGGGAACGAAGAATGGCATTAAAAACCGGGAGGTGGACTTGTAGAGGAGTTGTCCTACAGGGCAAATGTTACCAGTTCTTCAGAAGAACCCTTGATGCCAATACTGCTGAGTTACAATGTCAAAACACCTGCCCTAAAGGCCACCTGGCCTCCGTGACAAGCAGCCACATTCGTGAAGGAATGGGAAAACTAATGGACCGGTATGGCGGTCGCACTCGAGCATGGCTTGGAGGACGGAGAACGATTGGTACGAATTTCAAATGGTCGGATGGAGCGCAGTGGAGCTATAATAACTGGGCTTTTGGAGAGCCCAATAATGCTGGTGGGATGGAGAATTGTGTAGAAATACTGAGTTATCTGTCATTCAATGATGTACCATGCAATATACCCAAACCATTCATCTGTTCCTGCCCACTTTAGACAGCCAGGAGGTTAACCTAACCTGCTATACAGTGACTTTTATGAAGAACGTGTAAATAATAAGAATTATTATTGTAATTTTTAAAAAGTAATTTATAAGGGTTATTCCGTAATCAACCTGTTTTGTTAAATTTGCCATGGTTTACAAAAATAATAATAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60056 lncRNA downstream 20813 3647714 ~ 3647979 (-) True G52725
TU59998 lncRNA downstream 214242 3454343 ~ 3454550 (-) True G52670
TU59965 lncRNA downstream 261916 3406663 ~ 3406876 (-) True G52639
TU59949 lncRNA downstream 282732 3381984 ~ 3386060 (-) True G52623
TU59928 lncRNA downstream 366131 3300949 ~ 3302661 (-) True G52606
TU60066 lncRNA upstream 58474 3730900 ~ 3731251 (-) True G52735
TU60067 lncRNA upstream 58887 3731313 ~ 3731533 (-) True G52736
TU60070 lncRNA upstream 63397 3735823 ~ 3736139 (-) True G52739
TU60074 lncRNA upstream 70901 3743327 ~ 3743553 (-) True G52743
TU60101 lncRNA upstream 375397 4047823 ~ 4048261 (-) True G52770
CI01000009_03664045_03666052.mRNA mRNA downstream 2055 3663947 ~ 3666737 (-) True CI01000009_03664045_03666052
CI01000009_03643048_03645741.mRNA mRNA downstream 21632 3642248 ~ 3647160 (-) True CI01000009_03643048_03645741
CI01000009_03633868_03640910.mRNA mRNA downstream 27882 3633704 ~ 3640910 (-) True CI01000009_03633868_03640910
CI01000009_03622269_03631417.mRNA mRNA downstream 37375 3621937 ~ 3631417 (-) True CI01000009_03622269_03631417
CI01000009_03614390_03616151.mRNA mRNA downstream 52173 3613791 ~ 3616619 (-) True CI01000009_03614390_03616151
CI01000009_03699312_03715114.mRNA mRNA upstream 26886 3699312 ~ 3715114 (-) True CI01000009_03699312_03715114
CI01000009_03770045_03770497.mRNA mRNA upstream 97484 3769910 ~ 3770497 (-) True CI01000009_03770045_03770497
CI01000009_03791699_03858262.mRNA mRNA upstream 118272 3790698 ~ 3859234 (-) True CI01000009_03791699_03858262
CI01000009_04015167_04016764.mRNA mRNA upstream 342579 4015005 ~ 4016837 (-) True CI01000009_04015167_04016764
CI01000009_04069741_04071278.mRNA mRNA upstream 397288 4069714 ~ 4071604 (-) True CI01000009_04069741_04071278
TU59814 other downstream 406835 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU59711 other downstream 769385 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 1106259 2551724 ~ 2562533 (-) True G52410
TU59631 other downstream 1428028 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 1428313 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU60172 other upstream 544994 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 1829969 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 4753395 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5185726 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU67286 other upstream 8615791 12288217 ~ 12289518 (-) False G59097

Expression Profile