RNA id: CI01000009_05523743_05526184.mRNA



Basic Information


Item Value
RNA id CI01000009_05523743_05526184.mRNA
length 806
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000009_05523743_05526184
representative False

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 5523642 ~ 5526249 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGAGGGGAACAGAGGAGTGCTGGAAAAACAGCAAATTATGACTGAAAACAAGTTACAGCTCACAGTGAATCTATCCAGATATGAAACAGAGCCGCTGCACTGGCAGTGTGCAGTTTTTACTGAGAATAAACTCAGAGCTCTGGCCCCAATAACAATCAGTCTTTCCTCATCAACTACTAATGCTCCAAAAGACATCATGACACAGGACAGTCATCTACAGATGGTGATCGTCGTGGCGTGTGTTGTCACTGGCTGTGTGCTGATTCTGACGCTGGGACTTCTAGTTTTTAAACGTCAGCGAAAAACAGGTGCAACAAAAAAAATGTACTTTTTACGGAGGCTCAGACTTTTTGGTGTCACTCAGAGAGTCATGTTGCTGTTTTATGATGCCTGTATTGAATCCATCTTATTGTATGGTATAGCTGCCTGGTTTGGTAATTTGACAGTTACCTATAGATCACAGTTGAATCAGCTGGTGCATATCGCAATGAAAGAGGTTGGTCTGGGGGTTTACCCCAATCTTCAGTCTATATTCAAAAAAACTGCTTTTAAACAGGCAAGGAAAATGACTCTGGACCCATCTTATGTGCTTTATCCTGAATTTGAACTACTTCCATTTAGTCGACAGTTCCGTACTGCAAGGTTTAGATACAACCGCTATAGAAATTCTTTTGTTCCGTTGGCTACAAGGCTGTTGAACTCTAATTCAAAGGACATGACTGTGTGGATATCTTATTGATGTGGGTGTCTTGTTGTGCAGCTTCACCTGTATTGCCCAAGACAATTTTCCCTTAACAGGGACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU60780 lncRNA upstream 114070 5409457 ~ 5409673 (+) True G53383
TU60779 lncRNA upstream 114979 5408444 ~ 5408764 (+) True G53382
TU60733 lncRNA upstream 121515 5399593 ~ 5402228 (+) True G53338
TU60748 lncRNA upstream 155793 5365850 ~ 5367950 (+) True G53352
TU60650 lncRNA upstream 478803 5044705 ~ 5044940 (+) True G53257
TU60790 lncRNA downstream 8996 5535245 ~ 5538095 (+) False G53388
TU60811 lncRNA downstream 28521 5554770 ~ 5554990 (+) True G53396
TU60817 lncRNA downstream 47385 5573634 ~ 5573866 (+) True G53402
TU61023 lncRNA downstream 56208 5582457 ~ 5582685 (+) True G53584
TU61075 lncRNA downstream 216003 5742252 ~ 5742466 (+) True G53632
CI01000009_05522736_05523662.mRNA mRNA upstream 81 5522736 ~ 5523662 (+) False CI01000009_05522736_05523662
CI01000009_05502414_05506275.mRNA mRNA upstream 17468 5499971 ~ 5506275 (+) True CI01000009_05502414_05506275
CI01000009_05491807_05498189.mRNA mRNA upstream 24944 5491807 ~ 5498799 (+) True CI01000009_05491807_05498189
CI01000009_05418094_05487944.mRNA mRNA upstream 35242 5417979 ~ 5488501 (+) True CI01000009_05418094_05487944
CI01000009_05411199_05413237.mRNA mRNA upstream 110070 5411199 ~ 5413673 (+) True CI01000009_05411199_05413237
CI01000009_05538212_05539688.mRNA mRNA downstream 11963 5538212 ~ 5539688 (+) False CI01000009_05538212_05539688
CI01000009_05685508_05688628.mRNA mRNA downstream 159259 5685508 ~ 5688633 (+) True CI01000009_05685508_05688628
CI01000009_05696405_05703318.mRNA mRNA downstream 169422 5695671 ~ 5703921 (+) True CI01000009_05696405_05703318
CI01000009_05704310_05721474.mRNA mRNA downstream 177744 5703993 ~ 5722006 (+) True CI01000009_05704310_05721474
CI01000009_05761849_05767932.mRNA mRNA downstream 234734 5760983 ~ 5768703 (+) True CI01000009_05761849_05767932
TU58746 other upstream 2314759 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 2315220 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 2315437 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 2315819 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 2315819 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60791 other downstream 8996 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 334053 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 719315 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 3603051 9129300 ~ 9130286 (+) True G56100
TU64139 other downstream 4327110 9853359 ~ 9853515 (+) True G56323

Expression Profile