RNA id: CI01000009_09770695_09782443.mRNA


Basic Information

Item Value
RNA id CI01000009_09770695_09782443.mRNA
length 2439
RNA type mRNA
GC content 0.46
exon number 23
gene id CI01000009_09770695_09782443
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9770695 ~ 9782536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGAACGTGCATCTTGTTCCAGAGGAAGAGGAGGATGATTTGTATACAGGCTACAATGATTACAATCCGACTTTTGACTCAGAGGACCTTCACAACGATGTGGGCTTTCAGCAGGCTGTCAGGACAAGTCATGGCAGAAGACCACCAATGACTGCAAAATATCCTGGCACTGCTATTGGAGGGCGACCGATTGGAACAGCTTATGGGTCTCGGATTCCTGTTGGCACTGCAATGGGAAGGCCTATGACTGGAGCTGTTCAGGACGGTGCGGCTCGTCCCATGACTGCAGTGCGGGCAGCAGGATACTCTTCATCTATAGCTAGAGGCTCGGTGTTTGATCCACTGGGACAAGCAAAAGGACCAGCCCCTCCATTAGAGAGACAGAACGAAGACACGCCAGAGGAAAAGATAAAGATCCTGGAAAAGAAGGTGAATGATTTGATAGAGGAGAGCTGTCTCGCTCATGCTCGTGGGGATCTTCAGCTGTCTCTAGAGAAAGCCAAAGAGGCGGGCAGGAAGGAAAGGGCTCTGGTGAGACAGAGAGAACAAACAGGCACTGCAGACCACATCAATCTGGATCTGACCTACTCTGTGTTGTTTAATTTAGCAAACCAATATGCCAATAATGACATGTACACTGAGGCCTTGAACACATACCAAGTCATTGTGAAGAACAAAATGTTCAATAATGCTGGACGATTGAAAGTTAACATGGCAAATATCTATTTCAAGCAAAAGAATTACACAAAAGCAATCAAATTTTACCGCATGGCTTTGGATCAGATCTCAAATGCCCACAATGCAATGAGGATCAAGATCATGCAGAACATTGGTGTTGTGTTCATACATATGGGCCAGTACTCAGATGCCATCACATCCTTTGAGTACATCATGAGTGAGAGTCCCAACATAAAGACAGGCTTCAACCTCATCCTGTGCTACTATGCCATCGGAGACCGTGAAAGGATGAAGAAAGCTTTTCAGAAGCTCATTTGTGTGCCCCTCGATATTGATGATGAAGACAAGTATATCCCTGCAAATGATGACTCTCATGCAAACATGGTGATTGAGGCTATAAAGAATGATAAGCTTCACCAAATGGAAAGGGAGAGGAAAGCATTAGCAGAAAAATACATTATGACCTCAGCCAAGCTTATTGCTCCAGCCATTGAGTCGTCATTTGCAGCTGGGTGTGTGGACATGGTGAAGGGTTCACAATATGTGGAGCTTGCAAATGACTTGGAGATCAATAAAGCTATTACATACTTAAGACAGAGGGACTTCAAACAGGCAGTGGAGACGCTAAAGATGTTTGAGAAGAAGGACAGTCGGGTAAAAAGTGCCGCTGCCACTAATCTATCTTTTCTCTACTTTTTGGAAAAAGATTATGACCAGGCTGACCGCTATGCTGAGCTGGCCATGAGCGCTGACCGCTATAACCCTGCTGCCCTCATTAACAAAGGCAACACAGTGTTTGTGAAAGAGGACTATGAGAAAGCAGCAGAGTTTTACAAGGAGGCTCTTCGTAATGACTCGTCCTGTACTGAAGCCCTCTATAACTTAGAGTCAAATTCCTTAAGCAGCTTTAGATATGAGATGTTGGAAGACCCTCATCAGGCCATTGAGTGGCTGATGCAGCTCACCAGTGTGACCCCCACAGATGCCCAGGTGCTGGCCAAACTGGGAGACCTCTATGACAATGAAGGAGACAAATCTCAGGCCTTCCAGTACTATTATGAGTCGTACAGGTATTTTCCCTCAAACATTAGTGTGATCGAATGGTTGGGAGCATATTACATTGACACCCAGTTCTGTGAGAAAGCTATTCAGTACTTTGAGAGAGCTACCCTCATTCATAGCTTTGCATCTAATATAATTATCTATTGGGCAGGTCTACGCTTCCTGGTCAGGCTGTGCACTGATATGGGACTAAAAGAGGTGCAGGATTATGCCACCAAACTGAAGAAAGTTGAAAAAATGAAGGAGATCAGAGAGCAGAGGGTGAGATCTGGGAGAGAGAGCAGTGCTCGAGGTCGCAGGGAAGGCAGCGCTGGCAGTGTTTCTCGCTCTGAAGCTAAGTATAGTCCTGTGCTGCAGCAGGGCAGAGACAGTGGACAAAGCAACCATGGCACCAGCGCCAAGGGTGAGAGGCTTAGCGTTAAACTGAAAACTCTTCCCGGGTCCAATGAACCGTATGAGGCCAGCACTCAGCAGGAAATAGATGCTTCTTATGTCGATCCATTGGGGCCTCAAATGCAGAGACCAAAAACAGCAGCGAGGAAACGCACAGAGGAAGATGAGTTTGCTGATGAAGAGCTGGGAGATGACTTACTGCCTGAGTGACGTGTGCAACAGAGATCAGTTCAGAGGAAAGTCTGATATATGTCCAGACACTACATTTCTTTGAATTTCAAGCTCAACCAATAGCACTGTAGA

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K16474 IFT88; intraflagellar transport protein 88

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64134 lncRNA upstream 101516 9668742 ~ 9669179 (+) True G56320
TU64119 lncRNA upstream 115969 9647928 ~ 9654726 (+) True G56306
TU64046 lncRNA upstream 282151 9488185 ~ 9488544 (+) True G56243
TU64045 lncRNA upstream 283887 9486599 ~ 9486808 (+) True G56242
TU64006 lncRNA upstream 286725 9482094 ~ 9483970 (+) True G56204
TU64231 lncRNA downstream 82810 9865346 ~ 9865651 (+) True G56408
TU64201 lncRNA downstream 90696 9873232 ~ 9875702 (+) False G56383
TU64202 lncRNA downstream 90696 9873232 ~ 9876664 (+) False G56383
TU64200 lncRNA downstream 90778 9873314 ~ 9875702 (+) True G56383
TU64240 lncRNA downstream 110297 9892833 ~ 9895948 (+) False G56411
CI01000009_09716074_09733349.mRNA mRNA upstream 36317 9714372 ~ 9734378 (+) True CI01000009_09716074_09733349
CI01000009_09700487_09709797.mRNA mRNA upstream 60712 9700487 ~ 9709983 (+) True CI01000009_09700487_09709797
CI01000009_09685457_09693885.mRNA mRNA upstream 76807 9685457 ~ 9693888 (+) True CI01000009_09685457_09693885
CI01000009_09542674_09559750.mRNA mRNA upstream 210658 9540212 ~ 9560037 (+) True CI01000009_09542674_09559750
CI01000009_09499329_09500173.mRNA mRNA upstream 270496 9499329 ~ 9500199 (+) True CI01000009_09499329_09500173
CI01000009_09783235_09785477.mRNA mRNA downstream 699 9783235 ~ 9785563 (+) True CI01000009_09783235_09785477
CI01000009_09853929_09854476.mRNA mRNA downstream 71393 9853929 ~ 9854502 (+) False CI01000009_09853929_09854476
CI01000009_09866000_09866290.mRNA mRNA downstream 83187 9865723 ~ 9866394 (+) False CI01000009_09866000_09866290
CI01000009_09878612_09881564.mRNA mRNA downstream 96076 9878612 ~ 9881894 (+) True CI01000009_09878612_09881564
CI01000009_09952526_09962840.mRNA mRNA downstream 169990 9952526 ~ 9964279 (+) True CI01000009_09952526_09962840
TU63847 other upstream 640409 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 3522303 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 3837894 5860302 ~ 5860756 (+) True G53655
TU60796 other upstream 4231641 5522242 ~ 5522356 (+) False G53388
TU64139 other downstream 70823 9853359 ~ 9853515 (+) True G56323
TU65813 other downstream 1978250 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 2151406 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 2151406 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 2151406 11933942 ~ 11935251 (+) True G57811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074133 False 2941 mRNA 0.44 26 NC_007120.7 21365633 ~ 21383489 (-)
bowfin (Amia calva) AMCG00014516 True 3124 mRNA 0.46 27 CM030128.1 16346034 ~ 16370627 (+)