RNA id: CI01000009_15667251_15668333.mRNA


Basic Information

Item Value
RNA id CI01000009_15667251_15668333.mRNA
length 2200
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000009_15667251_15668333
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15667251 ~ 15669450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGGCTATTGACTACTTCAGTGAATTCTACAATGAACTCTACAATGAGTTCAACTATACAGAATACCAGAATGACACCGAATTTGTTCCGAATGACAATACGCTGCTCTGCTCCTCCGTCGCTTTTGGGAAAGCCATCAACATTTCATTCTGTGTCTTCTACATGCTCATCTTTCTGACGGCTATTCCTGGGAATCTGATCGTCGGCTGGGTCATCGGCTCTAACAGACGCTCACTTTCTGCTTCGGATATTTACCTATTCAACCTGATGCTGGCCGACACATTACTGGCTCTTATTCTGCCCTTTTCGGCGATTACTGTGATCCACGGTTGGGTGTTTGGTGATGTTTTATGCAAGATGGTTAGCCTGGTGAAGGAAGTGAACTTCTACACCAGCATCTTGTTTTTGGTGTGCATCAGCGTGGATCGCTACTTGGTCATCGTACGGGCTATGGAATCCAGGAAGGCTCAGAGGTTACTGTGCAGCGGGGTTGTCTGTGCATTGGTGTGGCTTTTGGGATGTGTGCTGTCCTTGCCGTCATTCTACAACGAGGCATTTTATGTGGAATTTTCTGATCAGACTATTTGTGCAGAACGCTTTGAGACGGACCACGCCGACGAGTGGCGACTGGCCACACGTATCATGAGGCACCTGCTTGGTTTCCTTCTCCCTCTGGTGGTCATGTTGATCTGCTACAGCGTGACAGTGGTGCGGCTCTTGCGTACGCGTGGTTTCCAGAAGCACAGAGCCATGAAGGTGATTGTAGCCGTGGTTGTGGCTTTTCTTCTGTGCTGGACCCCCTTCCATGTTTCCACGATAGTTGACACCCTCCTTAGGGCCAAAGTGGTTAACTTCAACTGTTTGACACGGACATCGGTGGACATCGCCATGTTCGCAACTCAAAACCTTGGCCTTCTGCATTGCTGTGTGAACCCAGTGCTGTACGCCTTTGTGGGAGAGAAGTTCAGAAGAAGGTTTCTGCATATGCTCTATAGAAAAGGAGTTCTGGATCGGTTCTCCGTCTCCAGATCTAGTAGGTCCTCCTCTCTGACCTCAGAAGTCACTTCCAGCTTCCTGTGAGCTATACTGCCTAGCAATGGACATCAATGTATGTGGACTGCAAGACACTTAGTGCACCTTTCTTTGTTTGCTTGAAATACAACAACACTTTGTTGTAGGGCAGGGGTGTCCAATTATGTTCCTGGAGGGCCACTTTCCGCCAGCCCTAATTCAAGACATCTGAACCAGATAATCAAGGTCTTCAGGATTACTAGAAATTTCCAGGCAGTTTTTGTTGGAACTAAACTCTAATAAGCTCTGCAGGAAAGTTGCCCTCCAGGAGCAGGATTGGAAACCCCTGTTCTAGAGGCTAATTGCCGTAATGCGTTGGCTCCCTCTATTGGTCACAAAAAGCGAAACCCATTATAGGGTGAGAAGAAAATGTTTGCTGCAGTGGTGACATATTTTTGTAGGCCAACTTGGATGCTAGCATTGGCAAAAACCCAATAGGATTTTTCCATTGGGTTGTTGGATAGTTCTCATGCTCTGTGATCAACAAAAATATGATTCTTACAAGTATTGTTCATCATGATAATCTTCACAAATTAACTCAACCGTTATGAATTTTGAAGCCTAAATACAATCAGTAGAAGTAAAAAGCTAAAGTTAAGCTATAAATGAACTACACTATGGTCACATGACTTCAACGCCACCACCATTTAGTTTCCGGTCACTCTTTAAAGTTTTCCTTGAAAGTTTGAATTAGAATAGTTTGCGAGAACTATAAACACAATGAAGCTGTGAAAGTAGACTAGTGAGTAGATGAGTTTTCATGTCTGGCATGATGACATTTAATGTCCCTGACAATCTCTACAGTCCCATTGAGCCACTTGTTAGCAACCACCTTTTTCAAGACAAGTAAAAGCTTTAAAAAATAGGTCATAGAGTAAAACGTGAAAATATCTTGAGCTTGTGTTCATTACAGACCTTATTTCAGGCATTTACCTAAAAATCCATTCAAAAAACCCACTGACTTTGGGACAATGGAACCAGAAGTGCTAAAATGCAACTCATTTCCAGGTTTTGGCCTTCAAAATTAATAATCATCCCTGCAGCACTTTATTGTTTGGCTGAGCTTCAAAATGTTTAAGAATCATATACGGATCATCATTGCTCAGACGGTGGGTTAATGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68530 lncRNA upstream 4556 15662473 ~ 15662695 (+) True G60213
TU68539 lncRNA upstream 110350 15556519 ~ 15556901 (+) True G60222
TU68538 lncRNA upstream 111418 15555606 ~ 15555833 (+) True G60221
TU68537 lncRNA upstream 111840 15555133 ~ 15555411 (+) True G60220
TU68536 lncRNA upstream 112555 15554354 ~ 15554696 (+) True G60219
TU68597 lncRNA downstream 8032 15677482 ~ 15694591 (+) True G60280
TU68603 lncRNA downstream 28329 15697779 ~ 15698147 (+) True G60286
TU68611 lncRNA downstream 79070 15748520 ~ 15749113 (+) True G60293
TU68650 lncRNA downstream 130231 15799681 ~ 15801256 (+) True G60303
CI01000009_15637754_15643935.mRNA mRNA upstream 23316 15637650 ~ 15643935 (+) True CI01000009_15637754_15643935
CI01000009_15625341_15626360.mRNA mRNA upstream 40848 15625159 ~ 15626403 (+) True CI01000009_15625341_15626360
CI01000009_15610515_15613753.mRNA mRNA upstream 53498 15610032 ~ 15613753 (+) True CI01000009_15610515_15613753
CI01000009_15415868_15427139.mRNA mRNA upstream 240053 15413174 ~ 15427198 (+) True CI01000009_15415868_15427139
CI01000009_14976078_14977321.mRNA mRNA upstream 689827 14975771 ~ 14977424 (+) True CI01000009_14976078_14977321
CI01000009_15680573_15681601.mRNA mRNA downstream 11123 15680573 ~ 15681976 (+) True CI01000009_15680573_15681601
CI01000009_15708273_15712002.mRNA mRNA downstream 37010 15706460 ~ 15712002 (+) False CI01000009_15708273_15712002
CI01000009_15738136_15745816.mRNA mRNA downstream 68622 15738072 ~ 15745866 (+) True CI01000009_15738136_15745816
CI01000009_15770057_15782295.mRNA mRNA downstream 100607 15770057 ~ 15782427 (+) False CI01000009_15770057_15782295
CI01000009_15872202_15973125.mRNA mRNA downstream 202752 15872202 ~ 15973231 (+) True CI01000009_15872202_15973125
TU68340 other upstream 291082 15352047 ~ 15376169 (+) False G60028
TU68341 other upstream 309405 15352047 ~ 15357846 (+) True G60028
TU66834 other upstream 711456 14955242 ~ 14955795 (+) True G58694
TU66845 other upstream 808607 14819219 ~ 14837553 (+) True G58702
TU66854 other upstream 893478 14766659 ~ 14773773 (+) False G58711
TU68607 other downstream 38542 15707992 ~ 15712005 (+) True CI01000009_15708273_15712002
TU68648 other downstream 88729 15758179 ~ 15758310 (+) True G60302

Expression Profile