RNA id: TU58233


Basic Information

Item Value
RNA id TU58233
length 348
RNA type TUCP
GC content 0.53
exon number 3
gene id G51122
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1680146 ~ 1681966 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCCCTGATATGCATTTTGGCGATCATCTCTGCAGTGTAGAGGAACATCAGCAGTGTGTCCAGGGTGAAGGTGACATACTGCAGGGGCGGGTAGTGCTCAAAGGTCTTAGGTGTATTCATACAGACCGAAATGACACTGATTATAGCACAGGCCCGCAGGAGAGAATGAACCCATGGTTTGTTGATCCAAAGAATGTCAGCACTGTCTGTCAGTGTTTCATCTGGTCCAAAGTCGGTCATGGGCTGGGCCTCGACCCGCGAGCTCTGCTTCCTCTTCAGCATGCTTGGGCTCGCTGTGCTATAGAGAGAGTGGATGGTCAGGCTCCTCATTGGTGCATTCATCCCCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58221 lncRNA upstream 22776 1657059 ~ 1657370 (+) True G51110
TU58186 lncRNA upstream 194526 1485264 ~ 1485620 (+) True CI01000009_01454610_01484907
TU58135 lncRNA upstream 197194 1482718 ~ 1482952 (+) True G51062
TU58005 lncRNA upstream 199680 1446595 ~ 1480466 (+) False G50937
TU58040 lncRNA upstream 222953 1456337 ~ 1457193 (+) True G50970
TU58243 lncRNA downstream 58646 1740612 ~ 1863136 (+) False G51125
TU58244 lncRNA downstream 58646 1740612 ~ 1863136 (+) False G51125
TU58245 lncRNA downstream 58646 1740612 ~ 1796482 (+) True G51125
TU58312 lncRNA downstream 167861 1849827 ~ 1854511 (+) True G51188
TU58318 lncRNA downstream 183478 1865444 ~ 1865801 (+) True G51193
CI01000009_01570544_01595199.mRNA mRNA upstream 84680 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01454610_01484907.mRNA mRNA upstream 194318 1454224 ~ 1485828 (+) False CI01000009_01454610_01484907
CI01000009_01431700_01434463.mRNA mRNA upstream 245604 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01402330_01407372.mRNA mRNA upstream 272391 1401061 ~ 1407755 (+) True CI01000009_01402330_01407372
CI01000009_01351236_01380055.mRNA mRNA upstream 299861 1351236 ~ 1380285 (+) True CI01000009_01351236_01380055
CI01000009_01692563_01725364.mRNA mRNA downstream 10597 1692563 ~ 1725364 (+) True CI01000009_01692563_01725364
CI01000009_01733394_01738937.mRNA mRNA downstream 49328 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01892219_01893628.mRNA mRNA downstream 210253 1892219 ~ 1893754 (+) True CI01000009_01892219_01893628
CI01000009_01897343_01919208.mRNA mRNA downstream 215377 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
CI01000009_01966898_01976924.mRNA mRNA downstream 284932 1966898 ~ 1977734 (+) True CI01000009_01966898_01976924
TU57959 other upstream 241791 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 909913 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1584359 94202 ~ 94283 (+) True G50472
TU58306 other downstream 212269 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 573133 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1380067 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1520806 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 1520806 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060

Expression Profile