RNA id: TU58318


Basic Information

Item Value
RNA id TU58318
length 358
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G51193
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1865444 ~ 1865801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGCACTTTAAAACAGGAGATTTATTATTTAGGCCAATTATAACCAATTACACACTATTTTTAGGAGCCTGTTGCATGCAAATTGTCATTGCACCTTCTTATTCAATTACTCTGGTCTTTTACCTTTTGACCTGGAAAACATTCAAGTTGGTGTTCTTTAAAACCTCAATGTCACCTTCAATCATTTTCCAACTGTCTTTCACTCTCACCAGAAGTCACCTCCTCCTCTTCTCTATTGTCCCCTCTCAGTTTGAAAGCATCATTATTAGAGAATGTATTCAATTAGCCCTAGGGCAGATGAGCAAACACTAACAGTCCTCTAAATAATAGTAATTATCTATAAACCTACAATTAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58243 lncRNA upstream 2308 1740612 ~ 1863136 (+) False G51125
TU58244 lncRNA upstream 2308 1740612 ~ 1863136 (+) False G51125
TU58312 lncRNA upstream 10933 1849827 ~ 1854511 (+) True G51188
TU58245 lncRNA upstream 68962 1740612 ~ 1796482 (+) True G51125
TU58221 lncRNA upstream 208074 1657059 ~ 1657370 (+) True G51110
TU58319 lncRNA downstream 3841 1869642 ~ 1869855 (+) True G51194
TU58320 lncRNA downstream 10181 1875982 ~ 1876208 (+) True G51195
TU58321 lncRNA downstream 12836 1878637 ~ 1878848 (+) True G51196
TU58322 lncRNA downstream 14310 1880111 ~ 1880357 (+) True G51197
TU58323 lncRNA downstream 14910 1880711 ~ 1880910 (+) True G51198
CI01000009_01733394_01738937.mRNA mRNA upstream 125976 1731294 ~ 1739468 (+) True CI01000009_01733394_01738937
CI01000009_01692563_01725364.mRNA mRNA upstream 140080 1692563 ~ 1725364 (+) True CI01000009_01692563_01725364
CI01000009_01570544_01595199.mRNA mRNA upstream 269978 1570079 ~ 1595466 (+) True CI01000009_01570544_01595199
CI01000009_01454610_01484907.mRNA mRNA upstream 379616 1454224 ~ 1485828 (+) False CI01000009_01454610_01484907
CI01000009_01431700_01434463.mRNA mRNA upstream 430902 1430850 ~ 1434542 (+) False CI01000009_01431700_01434463
CI01000009_01892219_01893628.mRNA mRNA downstream 26418 1892219 ~ 1893754 (+) True CI01000009_01892219_01893628
CI01000009_01897343_01919208.mRNA mRNA downstream 31542 1897343 ~ 1919516 (+) False CI01000009_01897343_01919208
CI01000009_01966898_01976924.mRNA mRNA downstream 101097 1966898 ~ 1977734 (+) True CI01000009_01966898_01976924
CI01000009_01990700_01991267.mRNA mRNA downstream 124899 1990700 ~ 1991387 (+) True CI01000009_01990700_01991267
CI01000009_01993176_01999494.mRNA mRNA downstream 127375 1993176 ~ 1999873 (+) True CI01000009_01993176_01999494
TU58233 other upstream 183478 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 427089 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1095211 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1769657 94202 ~ 94283 (+) True G50472
TU58306 other downstream 28434 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 389298 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1196232 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 1336971 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 1336971 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060

Expression Profile