Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU58779 |
| length | 1107 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G51589 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3222759 ~ 3223865 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58773 | lncRNA | upstream | 462 | 3221013 ~ 3222297 (+) | True | CI01000009_03211734_03220047 |
| TU58800 | lncRNA | upstream | 73327 | 3119464 ~ 3149432 (+) | True | G51610 |
| TU58740 | lncRNA | upstream | 103739 | 3118793 ~ 3119020 (+) | True | G51559 |
| TU58739 | lncRNA | upstream | 104403 | 3117858 ~ 3118356 (+) | True | G51558 |
| TU58732 | lncRNA | upstream | 113847 | 3108463 ~ 3108912 (+) | True | G51552 |
| TU58771 | lncRNA | downstream | 37332 | 3261197 ~ 3262009 (+) | True | G51581 |
| TU58775 | lncRNA | downstream | 38471 | 3262336 ~ 3262959 (+) | True | G51585 |
| TU58759 | lncRNA | downstream | 63463 | 3287328 ~ 3290810 (+) | True | G51569 |
| TU58827 | lncRNA | downstream | 84661 | 3308526 ~ 3308759 (+) | True | G51637 |
| TU58828 | lncRNA | downstream | 85213 | 3309078 ~ 3309537 (+) | True | G51638 |
| CI01000009_03211734_03220047.mRNA | mRNA | upstream | 1452 | 3211734 ~ 3221307 (+) | False | CI01000009_03211734_03220047 |
| CI01000009_03202999_03207060.mRNA | mRNA | upstream | 15331 | 3202207 ~ 3207428 (+) | False | CI01000009_03202999_03207060 |
| CI01000009_03164135_03169470.mRNA | mRNA | upstream | 52619 | 3162318 ~ 3170140 (+) | True | CI01000009_03164135_03169470 |
| CI01000009_03145417_03159851.mRNA | mRNA | upstream | 62845 | 3145417 ~ 3159914 (+) | True | CI01000009_03145417_03159851 |
| CI01000009_03123137_03137452.mRNA | mRNA | upstream | 84448 | 3122116 ~ 3138311 (+) | True | CI01000009_03123137_03137452 |
| CI01000009_03276572_03283625.mRNA | mRNA | downstream | 52707 | 3276572 ~ 3284006 (+) | True | CI01000009_03276572_03283625 |
| CI01000009_03301176_03305406.mRNA | mRNA | downstream | 77311 | 3301176 ~ 3305595 (+) | True | CI01000009_03301176_03305406 |
| CI01000009_03313112_03329470.mRNA | mRNA | downstream | 89247 | 3313112 ~ 3329510 (+) | True | CI01000009_03313112_03329470 |
| CI01000009_03330968_03333405.mRNA | mRNA | downstream | 106720 | 3330585 ~ 3333453 (+) | True | CI01000009_03330968_03333405 |
| CI01000009_03335503_03355421.mRNA | mRNA | downstream | 111638 | 3335503 ~ 3355426 (+) | True | CI01000009_03335503_03355421 |
| TU58746 | other | upstream | 13775 | 3202772 ~ 3208984 (+) | False | CI01000009_03202999_03207060 |
| TU58751 | other | upstream | 14236 | 3202772 ~ 3208523 (+) | False | CI01000009_03202999_03207060 |
| TU58749 | other | upstream | 14453 | 3202772 ~ 3208306 (+) | False | CI01000009_03202999_03207060 |
| TU58745 | other | upstream | 14835 | 3202772 ~ 3207924 (+) | False | CI01000009_03202999_03207060 |
| TU58748 | other | upstream | 14835 | 3202905 ~ 3207924 (+) | True | CI01000009_03202999_03207060 |
| TU60796 | other | downstream | 2298377 | 5522242 ~ 5522356 (+) | False | G53388 |
| TU60791 | other | downstream | 2311380 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU61110 | other | downstream | 2636437 | 5860302 ~ 5860756 (+) | True | G53655 |
| TU61103 | other | downstream | 3021699 | 6245564 ~ 6248392 (+) | True | G53651 |
| TU63847 | other | downstream | 5905435 | 9129300 ~ 9130286 (+) | True | G56100 |
