Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU58759 |
| length | 3483 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G51569 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3287328 ~ 3290810 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58775 | lncRNA | upstream | 24369 | 3262336 ~ 3262959 (+) | True | G51585 |
| TU58771 | lncRNA | upstream | 25319 | 3261197 ~ 3262009 (+) | True | G51581 |
| TU58779 | lncRNA | upstream | 63463 | 3222759 ~ 3223865 (+) | True | G51589 |
| TU58773 | lncRNA | upstream | 65031 | 3221013 ~ 3222297 (+) | True | CI01000009_03211734_03220047 |
| TU58800 | lncRNA | upstream | 137896 | 3119464 ~ 3149432 (+) | True | G51610 |
| TU58827 | lncRNA | downstream | 17716 | 3308526 ~ 3308759 (+) | True | G51637 |
| TU58828 | lncRNA | downstream | 18268 | 3309078 ~ 3309537 (+) | True | G51638 |
| TU58829 | lncRNA | downstream | 20144 | 3310954 ~ 3311469 (+) | True | G51639 |
| TU58849 | lncRNA | downstream | 136756 | 3427566 ~ 3427773 (+) | True | G51659 |
| TU58866 | lncRNA | downstream | 304494 | 3595304 ~ 3599012 (+) | True | G51673 |
| CI01000009_03276572_03283625.mRNA | mRNA | upstream | 3322 | 3276572 ~ 3284006 (+) | True | CI01000009_03276572_03283625 |
| CI01000009_03211734_03220047.mRNA | mRNA | upstream | 66021 | 3211734 ~ 3221307 (+) | False | CI01000009_03211734_03220047 |
| CI01000009_03202999_03207060.mRNA | mRNA | upstream | 79900 | 3202207 ~ 3207428 (+) | False | CI01000009_03202999_03207060 |
| CI01000009_03164135_03169470.mRNA | mRNA | upstream | 117188 | 3162318 ~ 3170140 (+) | True | CI01000009_03164135_03169470 |
| CI01000009_03145417_03159851.mRNA | mRNA | upstream | 127414 | 3145417 ~ 3159914 (+) | True | CI01000009_03145417_03159851 |
| CI01000009_03301176_03305406.mRNA | mRNA | downstream | 10366 | 3301176 ~ 3305595 (+) | True | CI01000009_03301176_03305406 |
| CI01000009_03313112_03329470.mRNA | mRNA | downstream | 22302 | 3313112 ~ 3329510 (+) | True | CI01000009_03313112_03329470 |
| CI01000009_03330968_03333405.mRNA | mRNA | downstream | 39775 | 3330585 ~ 3333453 (+) | True | CI01000009_03330968_03333405 |
| CI01000009_03335503_03355421.mRNA | mRNA | downstream | 44693 | 3335503 ~ 3355426 (+) | True | CI01000009_03335503_03355421 |
| CI01000009_03466999_03473248.mRNA | mRNA | downstream | 176043 | 3466853 ~ 3473414 (+) | True | CI01000009_03466999_03473248 |
| TU58746 | other | upstream | 78344 | 3202772 ~ 3208984 (+) | False | CI01000009_03202999_03207060 |
| TU58751 | other | upstream | 78805 | 3202772 ~ 3208523 (+) | False | CI01000009_03202999_03207060 |
| TU58749 | other | upstream | 79022 | 3202772 ~ 3208306 (+) | False | CI01000009_03202999_03207060 |
| TU58745 | other | upstream | 79404 | 3202772 ~ 3207924 (+) | False | CI01000009_03202999_03207060 |
| TU58748 | other | upstream | 79404 | 3202905 ~ 3207924 (+) | True | CI01000009_03202999_03207060 |
| TU60796 | other | downstream | 2231432 | 5522242 ~ 5522356 (+) | False | G53388 |
| TU60791 | other | downstream | 2244435 | 5535245 ~ 5538095 (+) | False | G53388 |
| TU61110 | other | downstream | 2569492 | 5860302 ~ 5860756 (+) | True | G53655 |
| TU61103 | other | downstream | 2954754 | 6245564 ~ 6248392 (+) | True | G53651 |
| TU63847 | other | downstream | 5838490 | 9129300 ~ 9130286 (+) | True | G56100 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU232007 | True | 222 | lncRNA | 0.39 | 1 | CI01000048 | 270974 ~ 271195 (+) |
| rainbow trout (Oncorhynchus mykiss) | TU335704 | True | 5126 | lncRNA | 0.42 | 2 | NC_048567.1 | 73662222 ~ 73667390 (-) |
| eurasian perch (Perca fluviatilis) | TU169227 | True | 1256 | lncRNA | 0.43 | 1 | NC_053123.1 | 20958707 ~ 20959962 (+) |
| striped catfish (Pangasianodon hypophthalmus) | TU335704 | True | 218 | lncRNA | 0.39 | 1 | NC_047612.1 | 16042362 ~ 16042579 (-) |
| bowfin (Amia calva) | TU87518 | True | 2057 | lncRNA | 0.35 | 1 | CM030128.1 | 13694815 ~ 13696871 (+) |
| mexican tetra (Astyanax mexicanus) | TU232007 | False | 1813 | TUCP | 0.40 | 2 | NC_035915.1 | 33228021 ~ 33281906 (+) |
