RNA id: TU58827


Basic Information

Item Value
RNA id TU58827
length 234
lncRNA type intronic
GC content 0.32
exon number 1
gene id G51637
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3308526 ~ 3308759 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATGGAGTTGGCCCACCCTTTGCAGCTATAACAGCCTCAACTCTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGCGAGAAGGCCTGGCTCGCAGTCTCCGCTCTAATTCATCCCAAAGGTGTTCTGTCGGGTTGAGGTCAGGACTCTGTGCAGGCCAATCAAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58759 lncRNA upstream 17716 3287328 ~ 3290810 (+) True G51569
TU58775 lncRNA upstream 45567 3262336 ~ 3262959 (+) True G51585
TU58771 lncRNA upstream 46517 3261197 ~ 3262009 (+) True G51581
TU58779 lncRNA upstream 84661 3222759 ~ 3223865 (+) True G51589
TU58773 lncRNA upstream 86229 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58828 lncRNA downstream 319 3309078 ~ 3309537 (+) True G51638
TU58829 lncRNA downstream 2195 3310954 ~ 3311469 (+) True G51639
TU58849 lncRNA downstream 118807 3427566 ~ 3427773 (+) True G51659
TU58866 lncRNA downstream 286545 3595304 ~ 3599012 (+) True G51673
TU58938 lncRNA downstream 301476 3610235 ~ 3610474 (+) True G51734
CI01000009_03301176_03305406.mRNA mRNA upstream 2931 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
CI01000009_03276572_03283625.mRNA mRNA upstream 24520 3276572 ~ 3284006 (+) True CI01000009_03276572_03283625
CI01000009_03211734_03220047.mRNA mRNA upstream 87219 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
CI01000009_03202999_03207060.mRNA mRNA upstream 101098 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03164135_03169470.mRNA mRNA upstream 138386 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03313112_03329470.mRNA mRNA downstream 4353 3313112 ~ 3329510 (+) True CI01000009_03313112_03329470
CI01000009_03330968_03333405.mRNA mRNA downstream 21826 3330585 ~ 3333453 (+) True CI01000009_03330968_03333405
CI01000009_03335503_03355421.mRNA mRNA downstream 26744 3335503 ~ 3355426 (+) True CI01000009_03335503_03355421
CI01000009_03466999_03473248.mRNA mRNA downstream 158094 3466853 ~ 3473414 (+) True CI01000009_03466999_03473248
CI01000009_03650884_03661357.mRNA mRNA downstream 342125 3650884 ~ 3661357 (+) True CI01000009_03650884_03661357
TU58746 other upstream 99542 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58751 other upstream 100003 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060
TU58749 other upstream 100220 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58745 other upstream 100602 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58748 other upstream 100602 3202905 ~ 3207924 (+) True CI01000009_03202999_03207060
TU60796 other downstream 2213483 5522242 ~ 5522356 (+) False G53388
TU60791 other downstream 2226486 5535245 ~ 5538095 (+) False G53388
TU61110 other downstream 2551543 5860302 ~ 5860756 (+) True G53655
TU61103 other downstream 2936805 6245564 ~ 6248392 (+) True G53651
TU63847 other downstream 5820541 9129300 ~ 9130286 (+) True G56100

Expression Profile